BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_pT_B22 (452 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz... 25 4.1 SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 5.4 SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 5.4 SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 24 9.5 SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 9.5 >SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 340 Score = 25.4 bits (53), Expect = 4.1 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +2 Query: 212 SMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKPGE 364 SM + Q NM +++ V C + ++ + S+ AE W+ KPGE Sbjct: 240 SMNTQQIYNM--SRAFNHVWCILNNKKVFLYDVHPLHSTSAEDWIHMKPGE 288 >SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 463 Score = 25.0 bits (52), Expect = 5.4 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = +1 Query: 34 FTMQVQDFNAPGR----KIKSVANHTFLYWNQINKIYHINIF 147 F + V+ N GR + SVAN + +Y N+ N+I I F Sbjct: 371 FPITVEGVNGTGRFILFNLSSVANDSTVYSNRPNRIAEIGRF 412 >SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 383 Score = 25.0 bits (52), Expect = 5.4 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = +1 Query: 34 FTMQVQDFNAPGR----KIKSVANHTFLYWNQINKIYHINIF 147 F + V+ N GR + SVAN + +Y N+ N+I I F Sbjct: 291 FPITVEGVNGTGRFILFNLSSVANDSTVYSNRPNRIAEIGRF 332 >SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccharomyces pombe|chr 3|||Manual Length = 721 Score = 24.2 bits (50), Expect = 9.5 Identities = 11/41 (26%), Positives = 19/41 (46%) Frame = +1 Query: 58 NAPGRKIKSVANHTFLYWNQINKIYHINIFGFMNLDVFLFN 180 +A G ++ T YW N + + I+ +L V +FN Sbjct: 183 SAAGGTQQNFVRQTTKYWVHPNNVTELKIYILKHLPVLVFN 223 >SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 93 Score = 24.2 bits (50), Expect = 9.5 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Frame = +1 Query: 91 NHTFLYWNQINKI---YHINIFGFMN 159 NH + WNQ N++ Y N FMN Sbjct: 26 NHAVVSWNQTNEVIGLYKANEHKFMN 51 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,366,707 Number of Sequences: 5004 Number of extensions: 20366 Number of successful extensions: 56 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 56 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 168258430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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