Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B22
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   4.1  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   5.4  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   5.4  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    24   9.5  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   9.5  

>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 212 SMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKPGE 364
           SM + Q  NM  +++   V C     + ++  +    S+ AE W+  KPGE
Sbjct: 240 SMNTQQIYNM--SRAFNHVWCILNNKKVFLYDVHPLHSTSAEDWIHMKPGE 288


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 34  FTMQVQDFNAPGR----KIKSVANHTFLYWNQINKIYHINIF 147
           F + V+  N  GR     + SVAN + +Y N+ N+I  I  F
Sbjct: 371 FPITVEGVNGTGRFILFNLSSVANDSTVYSNRPNRIAEIGRF 412


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 34  FTMQVQDFNAPGR----KIKSVANHTFLYWNQINKIYHINIF 147
           F + V+  N  GR     + SVAN + +Y N+ N+I  I  F
Sbjct: 291 FPITVEGVNGTGRFILFNLSSVANDSTVYSNRPNRIAEIGRF 332


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 58  NAPGRKIKSVANHTFLYWNQINKIYHINIFGFMNLDVFLFN 180
           +A G   ++    T  YW   N +  + I+   +L V +FN
Sbjct: 183 SAAGGTQQNFVRQTTKYWVHPNNVTELKIYILKHLPVLVFN 223


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +1

Query: 91  NHTFLYWNQINKI---YHINIFGFMN 159
           NH  + WNQ N++   Y  N   FMN
Sbjct: 26  NHAVVSWNQTNEVIGLYKANEHKFMN 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,366,707
Number of Sequences: 5004
Number of extensions: 20366
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)