Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B22
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         27   5.5  
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = +2

Query: 224 MQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWL------TRKPGEQRRSSI 382
           + P  +QST+++P  R  Q         L GT  S +  WL        KPG QR   +
Sbjct: 129 VNPSRLQSTETSPRRRTRQVCVAWVTNGLAGTIKSRSGEWLMNGDHVVTKPGSQRTDGV 187


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 167 YF-YLIKC-NKNMVMRMSMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQ 313
           YF Y I C  KN+ +R ++  +  +  +S +    ++ T++  E+ ++QLQ
Sbjct: 526 YFPYFIACMQKNLTLRAAINKLDQQVCESVKKMNALKHTRKVQEKKLKQLQ 576


>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 179 IKCNKNMVMRMSMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQ 313
           +K  +    R+  +  QP   Q  Q  P ++  QQ+P    QQ Q
Sbjct: 85  LKQQQQQQPRLKQQQQQPRLKQQQQQQPRLKQQQQQPRLQQQQQQ 129


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 25  KKNFTMQVQDFNAPGRKIKSVANHTFLYWNQINKIYHINI 144
           K ++  QV  F  P   IKSV +  F YW  IN  Y +N+
Sbjct: 732 KASYPYQVP-FPDPPHNIKSVRSAEFWYWVDING-YLVNV 769


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,800,128
Number of Sequences: 59808
Number of extensions: 144707
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)