Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B22
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica...    30   0.84 
At2g41850.1 68415.m05172 endo-polygalacturonase, putative simila...    30   0.84 
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    27   4.5  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    27   4.5  
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    27   7.8  

>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824
          Length = 431

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 393 QNVQILDLRCSPGFRVSQASAGE 325
           QN+QI DL C PG  +S  S G+
Sbjct: 274 QNLQIFDLTCGPGHGISIGSLGD 296


>At2g41850.1 68415.m05172 endo-polygalacturonase, putative similar
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 433

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 402 TNNQNVQILDLRCSPGFRVSQASAGE 325
           + +QNVQI D+ C PG  +S  S G+
Sbjct: 271 SGSQNVQINDITCGPGHGISIGSLGD 296


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 242 QSTQSTPGVRCTQQRPEQYMQQLQGTCSSP 331
           Q TQ+   V+ TQQ P+Q  Q +Q   SSP
Sbjct: 107 QQTQTQQLVQQTQQLPQQQQQIMQQISSSP 136


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 242 QSTQSTPGVRCTQQRPEQYMQQLQGTCSSP 331
           Q TQ+   V+ TQQ P+Q  Q +Q   SSP
Sbjct: 107 QQTQTQQLVQQTQQLPQQQQQIMQQISSSP 136


>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/60 (20%), Positives = 31/60 (51%)
 Frame = +2

Query: 188 NKNMVMRMSMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLTRKPGEQ 367
           NK+++    M   + +N+   +  P  +  ++  E Y+Q+++G   +  E  +++K  E+
Sbjct: 268 NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEE 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,885,798
Number of Sequences: 28952
Number of extensions: 99681
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)