Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B21
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.2  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   4.7  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   4.7  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 370 KSSACHRRNSENGGSCQQIDR 308
           K S C     +NGG+CQ + +
Sbjct: 144 KDSHCDHTTCKNGGTCQDLGK 164


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 548 IFSILIGTCFASKDLQSISNAWSFLPIV 631
           IF +LIG  +A  +     N +  LPIV
Sbjct: 249 IFVVLIGDAYAVLNSVLFQNVYKPLPIV 276


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 548 IFSILIGTCFASKDLQSISNAWSFLPIV 631
           IF +LIG  +A  +     N +  LPIV
Sbjct: 249 IFVVLIGDAYAVLNSVLFQNVYKPLPIV 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,069
Number of Sequences: 336
Number of extensions: 4248
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)