Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B21
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42939| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_57400| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23) 32 0.45
SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4) 30 1.8
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.8
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015) 28 7.3
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_13342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_9809| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_42939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 189 GVYGARMTGGGFGGCAVALVQKSELDALKQRILSQYKGKP 70
G G+R+TG G+GGC V++V++ ++D ++ +Y P
Sbjct: 4 GALGSRLTGAGWGGCTVSMVREQDVDDFIAKVTKEYYSTP 43
>SB_57400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 175 RTIHPWSIPEDVHYLIELHAGYLHQFA*RVMRLVKKFTHPFVILLGQF 318
R HPW I ED H + GYL +F LV + THP + + F
Sbjct: 1 RLPHPWYIAEDAHCNLPAVLGYLTKFTHPGDYLVVEDTHPGIYVHAGF 48
>SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)
Length = 487
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 232 RGARSDSGHPPGCSRGVWCENDGRWLRWMCGGFGSKERIGCFET 101
R +D HP G SRGV C G +W G + KE I T
Sbjct: 235 RDQTADGSHPHGASRGVTCRG-GFCRKWRIGRWSKKECIPSLTT 277
>SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4)
Length = 179
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 105 SKHPIRSFEPKPPHIHRSHLPS---FSHHTPLEHPGGCPLSDRAPRRIPPSICLAS-HAI 272
+KHPI+ P H + HLP+ H P +HP P+ P + P + L + H I
Sbjct: 30 NKHPIKVHLPNK-HPIKVHLPNKHPIKVHLPNKHPIKHPIKVHLPNKHPIKVHLPNKHPI 88
Query: 273 GKKVHPP 293
KVH P
Sbjct: 89 --KVHLP 93
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +3
Query: 120 RSFEPKPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPP 245
R+F P PPH SH P H G C LS R R P
Sbjct: 3060 RAFAPYPPHAQ-----GLSHPMPHTHIGLCTLSPRRTRAFAP 3096
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 168 SFSHHTPLEHPGGCPLSDRAPRRIPPS 248
S S HTP+ P GC + D PR P+
Sbjct: 2510 SSSMHTPIAQPCGCAIGDSRPRSKKPA 2536
>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
Length = 592
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 114 PIRSFEPKPPHIHRSHLPSFSHHTPLEHPGGCPL--SDRAPRRIP 242
P+ + PPH+++ P+ ++ P +PG P S P+R+P
Sbjct: 75 PVPNNMGPPPHVNQGPPPNSANQAPPPNPGPSPSFNSQGPPQRLP 119
>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 129 EPK-PPHIHRSHLPSFSHHTPLEHPGGCPLS 218
EP P H ++ SF H+P+ HP G L+
Sbjct: 1103 EPNLPEHFTENYPNSFPEHSPVTHPWGAELT 1133
>SB_13342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -3
Query: 267 HDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALV----QKSELDALKQ 100
+ L L VS LD + + G++ ++TG G GGCA+ L+ K ++ L
Sbjct: 37 NQQLLSLFGVSHPSLDSLCH-MTSKYGLH-TKLTGAGGGGCAITLIPPGTDKDKVAELMN 94
Query: 99 RILSQYKGK 73
++ ++K K
Sbjct: 95 KLQKEFKYK 103
>SB_9809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 429 ANMQDLDRLRDLGCNELVIRRARHVIGEIQRTVEAASKLTEKNYKRVGELFY 274
A+++D RL DL L+ R+ +HVI E + + E +N+ E FY
Sbjct: 44 ADIKDAKRLLDL----LLARKVKHVIREKKESKEDGKSDMSENFDDENERFY 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,624,515
Number of Sequences: 59808
Number of extensions: 598392
Number of successful extensions: 1800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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