Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B21
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily a... 76 2e-14
Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 30 2.1
Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical ... 29 3.7
AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical ... 29 3.7
Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 29 4.9
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 8.5
>AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily
assigned gene nameprotein 96 protein.
Length = 422
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/100 (40%), Positives = 56/100 (56%)
Frame = -3
Query: 369 RARHVIGEIQRTVEAASKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDILRDAP 190
RARHV E R + S +KN + +G L +SH S + E SC ELD+I + D
Sbjct: 315 RARHVFSEAYRVEQFESACAQKNIQEMGRLMNESHRSCAIDYECSCRELDEICRLYLD-H 373
Query: 189 GVYGARMTGGGFGGCAVALVQKSELDALKQRILSQYKGKP 70
G GAR+TG G+GGCAV L+ ++D + + S + KP
Sbjct: 374 GALGARLTGAGWGGCAVVLMAADDVDRVVAELPSLFVSKP 413
>Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical
protein R05A10.5 protein.
Length = 294
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 205 PPGCSRGVWCENDGRWLRWMCGG 137
PP CS GV C G W W+ G
Sbjct: 19 PPACSAGVRCPPGGLWGEWVTTG 41
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = +3
Query: 102 VSKHPIRSFEPKPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKK 281
+S +P + +P+ PH H+ H P +HP ++ PS + IG
Sbjct: 516 MSGYPQQQQQPQHPHQHQQPASVPMQHHPQQHPSQHQTQPNQQQQQHPS----GYGIGVS 571
Query: 282 VHPPFCNSSRSICWQLPP 335
P S+S+ PP
Sbjct: 572 TAPASMEPSQSVDQSAPP 589
>Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical
protein C03C10.3 protein.
Length = 381
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 711 VEKAKLCQKAEHDFPGMPCGIMDQYIVTMGKKDHALL-IDCKSLEAKQVPIK-MENICI 541
+E+ L + D GM C +M QYI + DH L+ + C L + P MENI I
Sbjct: 291 IEQEFLTEALPVDMIGMNCRLMSQYIEFVA--DHLLVELGCDKLYKSKNPFDFMENISI 347
>AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical
protein B0414.8b protein.
Length = 585
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = -3
Query: 411 DRLRDLGCNELVIRRARHVIGEIQRTVEAASKLTEKNYKRVGELFYQSHDSLSKLMEVSC 232
D + LG + V+ +H+ ++ + S+ E+NY V +F + +SLS+ +V
Sbjct: 106 DDILQLGSSYKVVNSLKHIF-DLPHVLR--SEFDERNYGEVLRMFKLAEESLSQYKDVPT 162
Query: 231 VEL 223
V+L
Sbjct: 163 VQL 165
>AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical
protein B0414.8a protein.
Length = 700
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = -3
Query: 411 DRLRDLGCNELVIRRARHVIGEIQRTVEAASKLTEKNYKRVGELFYQSHDSLSKLMEVSC 232
D + LG + V+ +H+ ++ + S+ E+NY V +F + +SLS+ +V
Sbjct: 106 DDILQLGSSYKVVNSLKHIF-DLPHVLR--SEFDERNYGEVLRMFKLAEESLSQYKDVPT 162
Query: 231 VEL 223
V+L
Sbjct: 163 VQL 165
>Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical
protein W04G5.10 protein.
Length = 397
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 444 TSLRAANMQDLDRLRDLGCNELVIRRARHVIGEIQRTVEAAS-KLTEKNYKRVGELFY 274
TSL +N DLDR R +EL+ + +IG+ ++ + K++ +NY +G F+
Sbjct: 56 TSLPISNKYDLDRTRIQTESELISETIKSLIGDNHLEIDPENLKISTENY--IGSGFF 111
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical protein
C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = -2
Query: 493 PSEEGSVSRSGLSTGTDIFEGGKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCQQI 314
PS ++S G T D + + A F RS+ + R NS ++
Sbjct: 1366 PSSSNNLSVPGRKTSNDEYSMSRAASFDN--RSQFSEDEVTEDGRSSRPNSTGANILYRV 1423
Query: 313 DREELQKGG 287
REEL +GG
Sbjct: 1424 RREELARGG 1432
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = -2
Query: 493 PSEEGSVSRSGLSTGTDIFEGGKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCQQI 314
PS ++S G T D + + A F RS+ + R NS ++
Sbjct: 1366 PSSSNNLSVPGRKTSNDEYSMSRAASFDN--RSQFSEDEVTEDGRSSRPNSTGANILYRV 1423
Query: 313 DREELQKGG 287
REEL +GG
Sbjct: 1424 RREELARGG 1432
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical protein
C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = -2
Query: 493 PSEEGSVSRSGLSTGTDIFEGGKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCQQI 314
PS ++S G T D + + A F RS+ + R NS ++
Sbjct: 1366 PSSSNNLSVPGRKTSNDEYSMSRAASFDN--RSQFSEDEVTEDGRSSRPNSTGANILYRV 1423
Query: 313 DREELQKGG 287
REEL +GG
Sbjct: 1424 RREELARGG 1432
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 369 RARHVIGEIQRTVEAASKLTEKNYKRVGELFYQSHD 262
R RH EI R A L +K YK V ++ + SHD
Sbjct: 593 RKRHSQSEISRMRRADDDLLQKLYKEVADILH-SHD 627
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 369 RARHVIGEIQRTVEAASKLTEKNYKRVGELFYQSHD 262
R RH EI R A L +K YK V ++ + SHD
Sbjct: 593 RKRHSQSEISRMRRADDDLLQKLYKEVADILH-SHD 627
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,609,317
Number of Sequences: 27780
Number of extensions: 427171
Number of successful extensions: 1299
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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