Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B19
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0546 - 4024282-4024291,4024486-4024550,4024739-4024904,402...    31   1.3  
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984...    30   2.4  
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904...    29   5.4  

>07_01_0546 -
           4024282-4024291,4024486-4024550,4024739-4024904,
           4025012-4025160,4025332-4025440,4025532-4025725,
           4025839-4025974,4026123-4026623,4026709-4026813,
           4027023-4027113,4027325-4027411,4028038-4028128,
           4028307-4028336
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 71  IKSSYSLIKTSYCYVCCRCTFTESE 145
           I  S SL +TS+C++CC  T  E E
Sbjct: 350 ISISMSLHQTSFCFICCHLTSGEKE 374


>03_06_0274 +
           32797541-32797570,32797682-32797769,32798291-32798401,
           32798678-32798765,32798918-32799022,32799117-32799617,
           32799749-32799884,32800023-32800216,32800306-32800414,
           32800803-32800982
          Length = 513

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 71  IKSSYSLIKTSYCYVCCRCTFTESE 145
           I  S SL  TS+C++CC  T  E E
Sbjct: 356 ISISMSLHHTSFCFICCHLTSGEKE 380


>05_06_0209 -
           26389902-26389928,26389981-26390161,26390265-26390407,
           26390480-26390588,26390839-26391023,26391428-26392082,
           26392392-26392496,26392757-26392844,26392885-26392947,
           26393451-26393513,26394328-26394484
          Length = 591

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 62  INKIKSSYSLIKTSYCYVCCRCTFTESE 145
           I  I  S S+ +T +C+VCC  T  E +
Sbjct: 377 IGSISVSMSIHQTHFCFVCCHLTSGEKD 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,494
Number of Sequences: 37544
Number of extensions: 252341
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)