Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B19
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   6.5  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   6.5  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   6.5  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 433  CYKFIMKIVPNETKITSGPTEPALSDTSICV 525
            C K +++IVP++TK     T P +S T + V
Sbjct: 6694 CEKGLVEIVPDDTKHVIDETVPTISSTPVIV 6724


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 433  CYKFIMKIVPNETKITSGPTEPALSDTSICV 525
            C K +++IVP++TK     T P +S T + V
Sbjct: 6739 CEKGLVEIVPDDTKHVIDETVPTISSTPVIV 6769


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 433  CYKFIMKIVPNETKITSGPTEPALSDTSICV 525
            C K +++IVP++TK     T P +S T + V
Sbjct: 6739 CEKGLVEIVPDDTKHVIDETVPTISSTPVIV 6769


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 53  TNCIN-KIKSSYSLIKTSYCYVCCRC---TFTESEFLLWQHFFEEKLTKFQKY*F 205
           TNC+   +  SY L+     ++ C C      E+  ++W +   +KLTK+  Y F
Sbjct: 32  TNCVYFTLWKSYDLLWFWMHFILCSCFPQLRPENYLIVWANLVIKKLTKYPDYTF 86


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 68  KIKSSYSLIKTSYCYVCCRCTFTESEFLLWQHFFEEKLTK 187
           K+ S+ S++   YC VC    +TE   L   H F E   K
Sbjct: 116 KLSSTQSVLAKGYCSVCAMDGYTELPHLTCGHCFCEHCWK 155


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 424 YLLCYKFIMKIVPNETKITSGPTEPAL-SDTSICVV-RA*SSIVGTRQWSN 570
           YLLC + IM I   + K+ S    P+L SD ++ ++ RA  +I   ++++N
Sbjct: 298 YLLCQQIIMSIHLYQQKMKSNDAAPSLRSDCAVGIMQRALITIEAVKEFNN 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,476
Number of Sequences: 27780
Number of extensions: 275219
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)