Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B19
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    30   2.0  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    29   2.6  

>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 653 IPRKIQIIKCN*LYVSLKKNPLN 585
           I R I+ +KC+ LYV +KKNP N
Sbjct: 443 ITRAIEWMKCSYLYVRMKKNPEN 465


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
           similar to SP|Q05022 rRNA biogenesis protein RRP5
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00575: S1 RNA binding domain
          Length = 1838

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 540 ASCSDNTN*SVTQGWFSRTTGNFCFIRYY 454
           +S +D T   VT GW ++   + CF+R+Y
Sbjct: 496 SSYTDATEGLVTHGWITKIEKHGCFVRFY 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,019
Number of Sequences: 28952
Number of extensions: 236727
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)