Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B17
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   2.9  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    26   3.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.6  

>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 401 CISEKLGLVRNLYKRE*DCAPLNSRL 324
           CI EKL  V N+ ++E  C P  S L
Sbjct: 110 CIKEKLRRVANITEQEQQCIPAESSL 135


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 273 KNHLHCFLQCMNTVKP 320
           + H+ CF  C+NT KP
Sbjct: 40  EEHIKCFTTCINTYKP 55


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 281  FALLPPVYEYSQTWISESSREHNLILAYRGFSLTRVS 391
            F +LP  + ++  W+S ++ E  +  AYR +S+  ++
Sbjct: 1091 FDVLPAFFCHTDPWVSLAALEVYVRRAYRAYSVLEIN 1127


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 221 TYKLSLLFLSCGGFNPLKKSFALLPPVYEYSQTWISE 331
           TY  S+       + P ++ + LL  +Y Y+ +WIS+
Sbjct: 438 TYPTSIPGEQIEEYFPFEEFYYLLSSIYTYNVSWISD 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,627
Number of Sequences: 5004
Number of extensions: 44504
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)