Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B17
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580...    30   1.3  
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826...    30   1.7  
06_01_0156 + 1171717-1174140                                           28   5.2  
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847     28   6.8  

>12_02_0617 +
           21256745-21256943,21257454-21257647,21257836-21258042,
           21258115-21258232,21258325-21258401,21258513-21258692,
           21259312-21259356,21260309-21260413,21261115-21261261
          Length = 423

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 275 KSFALLPPVYEYSQTWISESSREHNLILAYRGFS 376
           K F+  PP Y+    WI+E   E+NL    RG +
Sbjct: 336 KPFSKFPPCYKDMSFWINEEFTENNLCEVVRGIA 369


>04_04_1581 -
           34581455-34581466,34581525-34581616,34582584-34582686,
           34583761-34583837,34583913-34583959,34584494-34584594,
           34584751-34584840,34585152-34585271,34586171-34586517,
           34587013-34587285,34587835-34588165
          Length = 530

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 455 SLSLNGSTLIFRFNMMQNRTFLRN*LTIN*VSQTNRTV 568
           S++ NG  LI RFN  + R  LR  LT + V    R V
Sbjct: 347 SMNQNGENLIIRFNCREYRVILRKELTNSDVGNIGRIV 384


>06_01_0156 + 1171717-1174140
          Length = 807

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 194 EHVLS*MLMTYKLSLLFLSCGGFNPLKKSFALLPPVYE 307
           +H+L+ + M ++L  L +S   F  L++SF  LPP+ E
Sbjct: 284 DHLLASLDMDHRLRRLCVSFALFKLLRRSFERLPPMTE 321


>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
          Length = 943

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 371 NLYKRE*DCAPLNSR--LSRFDCIHTLEEAMQMIFSKD*IHHSLKITNLIYRSS 216
           NL+K   +C   NS   + RFD I  +   +  +  +  IH++LK +N++  S+
Sbjct: 744 NLHKHLHECTEDNSLSWMERFDIILGVARGLTHLHQRGIIHYNLKSSNVLLDSN 797


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,744
Number of Sequences: 37544
Number of extensions: 231366
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)