Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B17
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
 Frame = +1

Query: 313  SNLDKREFKGAQS-HSRL*RF-LTNPSFSLMHPLNLISRFPGFKRIHYFKFIT*WQ---- 474
            S    RE KG ++  +R+     TN +  +    + IS   G  R+  FKF T  +    
Sbjct: 857  SKSSSRESKGQRNVKTRIASISFTNSTGYVAFSSDKISGLTGSFRVQ-FKFQTLMRSALL 915

Query: 475  YFDFPF*HDAEQNFPSQLINDKLSKSDKQDGTQGHVSIRK 594
            +F  P  HD +Q+F  Q++N +L  + +  G + H +  K
Sbjct: 916  FFTLPK-HDYDQSFRLQMLNGRLKYTYRTSGQEFHTTSPK 954


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,546
Number of Sequences: 27780
Number of extensions: 238720
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)