Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B16
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    41   2e-04
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   4.3  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   4.3  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    25   9.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   9.9  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.9  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  

>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = -3

Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLK 97
           L G +LV AKKFVES P V+K +I K++AE +K
Sbjct: 161 LLGLSLVDAKKFVESAPKVLKENILKEDAEAIK 193



 Score = 33.5 bits (73), Expect = 0.028
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -2

Query: 451 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPD-XXXXXXXXXXXXXXXXXXXXXXXXXXX 275
           +I ++V +I++L+LLE SEL + LK++LN+ +                            
Sbjct: 76  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEE 135

Query: 274 KTSFTVKMTKFDDKQKVALIKEVQ 203
           KT++ +K+  FD   K  +IKEV+
Sbjct: 136 KTTWNLKLESFDAGSKAKVIKEVK 159


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 293 LFFINSSRWSHC-ESAHWHNWSVGQVQS 373
           LFF NSSR+S C ES  W  +S G V S
Sbjct: 136 LFFSNSSRFSACEESGEWVIYS-GDVYS 162


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = -2

Query: 649 SQTNIILFENLSKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGV 470
           S+T  I F   S NKTR +NG    +   +    L  CS    E+     P+  P   G 
Sbjct: 64  SETLAIAFYLASLNKTRALNGTTAEEKAKV----LQYCSFTNSELPGAFRPIIAPRVFGA 119

Query: 469 --DKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 356
             D+  + + E  +  I      E++  + ++  RL L D
Sbjct: 120 PYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLAD 159


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 195 LEGFNLVQAKKFVESVPTVVKADISKD 115
           ++GF + + KK  + +PTV  AD  KD
Sbjct: 533 IDGFFVAKLKKISDKIPTVNVADDMKD 559


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 529 LRQEVTQTVTPLTIP--VPEGVDKPVSPKIEKIVFE 428
           LR+  T   T    P  VPE  DKP   K++  VFE
Sbjct: 25  LRRVTTDATTSRANPAHVPEEHDKPFPVKLDDSVFE 60


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 469 DKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLN 365
           ++ +S KI  ++ E+ N  LLE+ E    L +R+N
Sbjct: 601 EEKLSGKITGMLLEMPNSELLELLEDDSALNERVN 635


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 242 KFRHFNCKTGLHSFRGCLFFINSSRWSHCE 331
           KF     +TG H   G L ++ SS W+  E
Sbjct: 531 KFLKMGLETGWHGKFGSLNYVTSSTWARQE 560


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 16  FFFFSTQCXFSLCLFNFSHGSNFGSCLF*FLGFIFRNICLHYC 144
           FF    Q   S  LF+ SH  +F    F FL F   +  L  C
Sbjct: 157 FFLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFILFPC 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,939
Number of Sequences: 5004
Number of extensions: 39567
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)