Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B16
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)            51   1e-06
SB_33998| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-19)                 29   3.4  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_14646| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -2

Query: 505 VTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDX-XXXXXXXX 329
           ++ L  P  +   +     I+KIV +I+ L LLEVSEL+++LK  L + D          
Sbjct: 47  MSSLAAPDADDSQRHYPNHIKKIVDDISKLTLLEVSELNELLKVTLKIQDVPMMAAGAMS 106

Query: 328 XXXXXXXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQ 203
                              T FTVK+T FD   KV LIKE++
Sbjct: 107 APAAAQEAASEEPEKEAEPTEFTVKLTGFDAAAKVKLIKEIK 148



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/36 (55%), Positives = 29/36 (80%)
 Frame = -3

Query: 198 LLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 91
           L+ G NLVQAKKFVE +P  V+  ++K+E+E+LK+A
Sbjct: 150 LIPGMNLVQAKKFVEGLPQNVREKVNKEESEQLKKA 185


>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
          Length = 305

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -2

Query: 505 VTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDX-XXXXXXXX 329
           ++ L  P  +   +     I+KIV +I+ L LLEVSEL+++LK  L + D          
Sbjct: 194 MSSLAAPDADDSQRHYPNHIKKIVDDISKLTLLEVSELNELLKVTLKIQDVPMMAAGAMS 253

Query: 328 XXXXXXXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQ 203
                              T FTVK+T FD   KV LIKE++
Sbjct: 254 APAAAQEAASEEPEKEAEPTEFTVKLTGFDAAAKVKLIKEIK 295


>SB_33998| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-19)
          Length = 331

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = +1

Query: 16  FFFFSTQ--CXFSLCLFNFSHGSNFGSCLF*FLGFIFRNICLHYCGYTLDKLLG-LH*IK 186
           FF F+    C +S  L+   H  +F       + F F    ++ C  TLD  LG LH  +
Sbjct: 79  FFTFTNAIICRYSTVLYEVCHLPDFYYAQNCLMSFFFTASVMNLCALTLDIYLGVLHPYR 138

Query: 187 --SFKKTXXXXXSVPL 228
             SFKK       + L
Sbjct: 139 YQSFKKASTVGGFIAL 154


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 508  TVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNL 362
            T  P   P P   D P  P++E       NL  ++V  LS+ +KK+L L
Sbjct: 1041 TPPPTEPPTPPPTDPPTQPRVE------LNLVHIDVYNLSKQVKKKLGL 1083


>SB_14646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 43  FSLCLFNFSHGSNFGSCLF*FLGFIFRNI 129
           F LCLF  ++  N+  CL   LG++F ++
Sbjct: 14  FGLCLFRIANIGNYTGCLRWLLGWLFGSL 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,956
Number of Sequences: 59808
Number of extensions: 282388
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)