Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B16
(671 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79865-1|CAA56249.1| 198|Homo sapiens mitochondrial ribosomal p... 50 8e-06
BC007497-1|AAH07497.1| 198|Homo sapiens mitochondrial ribosomal... 50 8e-06
BC002344-1|AAH02344.1| 198|Homo sapiens mitochondrial ribosomal... 50 8e-06
AF105278-1|AAD16894.1| 99|Homo sapiens 5c5-2 protein protein. 50 8e-06
AF059736-1|AAG32154.1| 198|Homo sapiens mitoribosomal protein L... 50 8e-06
AB051337-1|BAB54927.1| 59|Homo sapiens mitochondrial ribosomal... 50 8e-06
U25041-1|AAC73110.1| 178|Homo sapiens 5C5 protein. 44 5e-04
BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting... 31 3.8
BC022300-1|AAH22300.1| 372|Homo sapiens ATP6V0A2 protein protein. 31 3.8
AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein. 31 3.8
>X79865-1|CAA56249.1| 198|Homo sapiens mitochondrial ribosomal
protein L7L12 protein.
Length = 198
Score = 50.0 bits (114), Expect = 8e-06
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVG 76
++G NLVQAKK VES+P +KA+++K EAEK+K A VG
Sbjct: 153 IQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVG 192
Score = 45.2 bits (102), Expect = 2e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = -2
Query: 478 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD-----XXXXXXXXXXXXXX 314
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 313 XXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQ 203
+T FTV++T+ KV LIKE++
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIK 150
>BC007497-1|AAH07497.1| 198|Homo sapiens mitochondrial ribosomal
protein L12 protein.
Length = 198
Score = 50.0 bits (114), Expect = 8e-06
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVG 76
++G NLVQAKK VES+P +KA+++K EAEK+K A VG
Sbjct: 153 IQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVG 192
Score = 45.2 bits (102), Expect = 2e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = -2
Query: 478 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD-----XXXXXXXXXXXXXX 314
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 313 XXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQ 203
+T FTV++T+ KV LIKE++
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIK 150
>BC002344-1|AAH02344.1| 198|Homo sapiens mitochondrial ribosomal
protein L12 protein.
Length = 198
Score = 50.0 bits (114), Expect = 8e-06
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVG 76
++G NLVQAKK VES+P +KA+++K EAEK+K A VG
Sbjct: 153 IQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVG 192
Score = 45.2 bits (102), Expect = 2e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = -2
Query: 478 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD-----XXXXXXXXXXXXXX 314
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 313 XXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQ 203
+T FTV++T+ KV LIKE++
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIK 150
>AF105278-1|AAD16894.1| 99|Homo sapiens 5c5-2 protein protein.
Length = 99
Score = 50.0 bits (114), Expect = 8e-06
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVG 76
++G NLVQAKK VES+P +KA+++K EAEK+K A VG
Sbjct: 54 IQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVG 93
>AF059736-1|AAG32154.1| 198|Homo sapiens mitoribosomal protein L12
protein.
Length = 198
Score = 50.0 bits (114), Expect = 8e-06
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVG 76
++G NLVQAKK VES+P +KA+++K EAEK+K A VG
Sbjct: 153 IQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVG 192
Score = 45.2 bits (102), Expect = 2e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = -2
Query: 478 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD-----XXXXXXXXXXXXXX 314
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 313 XXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQ 203
+T FTV++T+ KV LIKE++
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIK 150
>AB051337-1|BAB54927.1| 59|Homo sapiens mitochondrial ribosomal
protein L7/L12 protein.
Length = 59
Score = 50.0 bits (114), Expect = 8e-06
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVG 76
++G NLVQAKK VES+P +KA+++K EAEK+K A VG
Sbjct: 14 IQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVG 53
>U25041-1|AAC73110.1| 178|Homo sapiens 5C5 protein.
Length = 178
Score = 44.0 bits (99), Expect = 5e-04
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = -2
Query: 478 EGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD-----XXXXXXXXXXXXXX 314
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 313 XXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQ 203
+T FTV+ T+ KV LIKE++
Sbjct: 114 QEAVEEDIPIAKERTHFTVRRTEAKPVDKVKLIKEIK 150
>BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting,
lysosomal V0 subunit a2 protein.
Length = 856
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 547 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLK 377
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 376 KRLNL 362
+ L
Sbjct: 114 NKEKL 118
>BC022300-1|AAH22300.1| 372|Homo sapiens ATP6V0A2 protein protein.
Length = 372
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 547 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLK 377
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 376 KRLNL 362
+ L
Sbjct: 114 NKEKL 118
>AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein.
Length = 856
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 547 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLK 377
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 376 KRLNL 362
+ L
Sbjct: 114 NKEKL 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,687,950
Number of Sequences: 237096
Number of extensions: 1319367
Number of successful extensions: 2814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2814
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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