Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B16
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical pr...    67   9e-12
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily ass...    28   6.9  

>Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical
           protein W09D10.3 protein.
          Length = 173

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 38/97 (39%), Positives = 56/97 (57%)
 Frame = -2

Query: 487 PVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXX 308
           P+P   D+ +S K+  +V EI NL+LL+VS+L+  LKKRLN+PD                
Sbjct: 34  PLPSE-DRAISAKVSSLVEEIANLSLLDVSDLNWALKKRLNIPD--QPLMAAAAAAPAAQ 90

Query: 307 XXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEVQGS 197
                      K +FTVK+TKFDD +K+A+IKE++ +
Sbjct: 91  AEAEAASDVPQKMTFTVKLTKFDDTKKIAIIKEIRNA 127



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 23/41 (56%), Positives = 28/41 (68%)
 Frame = -3

Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGA 73
           + G NLVQAKKFVE+ P  VK D+ K EA++LK    K GA
Sbjct: 128 IPGLNLVQAKKFVETAPVNVKEDLGKAEADELKAILEKAGA 168


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -2

Query: 616 SKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKI 437
           S N TR +    + +N  +QW + +   +   EV + +  L  P        +SPK ++I
Sbjct: 588 SNNATRTVVAATVNEN-GIQWPAET---INIDEVVREIRGLMAPTRRNFAISLSPKTDEI 643

Query: 436 VFEITNLNLLE 404
            ++  NLN L+
Sbjct: 644 DYQAINLNRLK 654


>U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform b protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -2

Query: 661 IPTHSQTN--IILF---ENLSKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTP 497
           +P+ SQ +  + LF   E  S+NK+   +   + K   LQ  S SR ++ RQ    TV+P
Sbjct: 54  VPSSSQPSSFVELFDEEERKSRNKSVKWDDTLVSKEEILQVNSASRPALPRQHSASTVSP 113

Query: 496 L 494
           L
Sbjct: 114 L 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,292
Number of Sequences: 27780
Number of extensions: 225047
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)