Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B16
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36420.1 68417.m05174 ribosomal protein L12 family protein 38 0.008
At4g37660.1 68417.m05326 ribosomal protein L12 family protein ri... 36 0.019
At1g70190.1 68414.m08077 ribosomal protein L12 family protein co... 35 0.043
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 35 0.057
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 35 0.057
At2g03130.1 68415.m00266 ribosomal protein L12 family protein 33 0.13
At3g27850.1 68416.m03473 50S ribosomal protein L12-3, chloroplas... 33 0.17
At3g27830.1 68416.m03471 50S ribosomal protein L12-1, chloroplas... 33 0.17
At4g15100.1 68417.m02321 serine carboxypeptidase S10 family prot... 32 0.40
At1g10060.1 68414.m01134 branched-chain amino acid aminotransfer... 31 0.70
At1g66370.1 68414.m07538 myb family transcription factor (MYB113... 31 0.92
At5g03670.1 68418.m00326 expressed protein 29 3.7
At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplas... 29 3.7
At3g06040.2 68416.m00691 ribosomal protein L12 family protein co... 28 4.9
At3g06040.1 68416.m00690 ribosomal protein L12 family protein co... 28 4.9
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote... 28 6.5
At4g20470.1 68417.m02986 hypothetical protein 27 8.6
At1g42980.1 68414.m04948 formin homology 2 domain-containing pro... 27 8.6
>At4g36420.1 68417.m05174 ribosomal protein L12 family protein
Length = 179
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGA 73
+ L +AK VE PT++K +SK+EAEK+ E VGA
Sbjct: 134 ITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGA 174
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = -2
Query: 457 SPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 356
S + KIV E++NL LLE +L+++L+++LN+ +
Sbjct: 42 SENVSKIVNELSNLTLLETMDLTEILRQKLNISE 75
>At4g37660.1 68417.m05326 ribosomal protein L12 family protein
ribosomal protein L12, Liberobacter africanum, U09675
Length = 167
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -3
Query: 180 LVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGAM 70
L +AK VE P +VK ++K+EAEK+ E VGA+
Sbjct: 127 LKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAI 163
>At1g70190.1 68414.m08077 ribosomal protein L12 family protein
contains similarity to ribosomal protein GI:7270590 from
[Arabidopsis thaliana]
Length = 208
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 180 LVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGA 73
L +AK VE P ++KA +SK+E EK+ E +GA
Sbjct: 168 LKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGA 203
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = -2
Query: 463 PVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 356
P + ++ ++V EI++L LLE+SEL ++ K+ + +
Sbjct: 66 PPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTE 101
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 550 SLSR-CSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLE 404
S+SR +V + Q+V PLT+PVP +P PK+ + V + +LLE
Sbjct: 573 SVSRPVTVSAERPAQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLE 622
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 550 SLSR-CSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLE 404
S+SR +V + Q+V PLT+PVP +P PK+ + V + +LLE
Sbjct: 577 SVSRPVTVSAERPAQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLE 626
>At2g03130.1 68415.m00266 ribosomal protein L12 family protein
Length = 110
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 189 GFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGA 73
G L +A K V PTV+K +SK+E E++ E +GA
Sbjct: 48 GVGLKEAMKLVVKAPTVLKTGLSKEEGEEVVEKLNALGA 86
>At3g27850.1 68416.m03473 50S ribosomal protein L12-3, chloroplast
(CL12-C) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 187
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGA 73
L L +AK+ +E +P K I+KDEAE+ K+ + GA
Sbjct: 142 LTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGA 182
>At3g27830.1 68416.m03471 50S ribosomal protein L12-1, chloroplast
(CL12-A) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 191
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGA 73
L L +AK+ +E +P K I+KDEAE+ K+ + GA
Sbjct: 146 LTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGA 186
>At4g15100.1 68417.m02321 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]
Length = 407
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 158 TNFLACTKLNPSRRPLXFFDQCHFLFV-IKFRHFNCKTGLHSFRGCLFFINSSRWSHCES 334
TN+ +K P RR L +D C +V + + + + LH+ G +N WS C
Sbjct: 235 TNYHISSKRMPPRR-LAGYDPCLDDYVKVYYNRADVQKALHASDG----VNLKNWSICNM 289
Query: 335 AHWHNWS 355
+HNW+
Sbjct: 290 EIFHNWT 296
>At1g10060.1 68414.m01134 branched-chain amino acid aminotransferase
1 / branched-chain amino acid transaminase 1 (BCAT1)
nearly identical to SP|Q93Y32 Branched-chain amino acid
aminotransferase 1, mitochondrial precursor (EC
2.6.1.42) (Atbcat-1) {Arabidopsis thaliana}; contains
Pfam profile: PF01063 aminotransferase class IV
Length = 309
Score = 31.1 bits (67), Expect = 0.70
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +3
Query: 390 LSSDTSKRFKLVISKTIFSILGETGLSTP--SGT---GIVRGVTVCVTSCRRTE 536
L +DT K + V + IF + G T + TP SGT GI RG T C S RRTE
Sbjct: 257 LDADTGKNIEEVSAANIFLVKGNT-IVTPATSGTILGGITRGRTKC--SGRRTE 307
>At1g66370.1 68414.m07538 myb family transcription factor (MYB113)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 246
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 622 NLSKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPV 482
N + K + +N I ++ N+ W SL VL E T+T +T+P+
Sbjct: 184 NKDEQKDKLIN-INLLDGDNMWWESLLEADVLGPEATETAKGVTLPL 229
>At5g03670.1 68418.m00326 expressed protein
Length = 516
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 559 QWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVS 455
+ +SL C ++ Q V +T + VPEGV+ +S
Sbjct: 392 EMKSLYHCEIITQRVLKTYFEEMVEVPEGVEALIS 426
>At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplast
(CL12-B) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 193
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 195 LEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA*TKVGA 73
+ +L ++K+ +E P K ++KDEAE+ K + GA
Sbjct: 148 MTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKTQLEEAGA 188
>At3g06040.2 68416.m00691 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 28.3 bits (60), Expect = 4.9
Identities = 29/121 (23%), Positives = 49/121 (40%)
Frame = -2
Query: 565 NLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQ 386
++Q R L + SV + + + P ++ P G S KI ++ I L+ E ++
Sbjct: 22 SVQVRFLQQDSVSKAKPKKYKYP-SVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGP 80
Query: 385 VLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEV 206
L + L LP T+F VK+ KF+ K+ +IKEV
Sbjct: 81 ALNEHLRLPKQQMISSDGIGAKQDTGAGNVEEKKEK--TAFDVKLEKFNASDKIKVIKEV 138
Query: 205 Q 203
+
Sbjct: 139 R 139
>At3g06040.1 68416.m00690 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 28.3 bits (60), Expect = 4.9
Identities = 29/121 (23%), Positives = 49/121 (40%)
Frame = -2
Query: 565 NLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQ 386
++Q R L + SV + + + P ++ P G S KI ++ I L+ E ++
Sbjct: 22 SVQVRFLQQDSVSKAKPKKYKYP-SVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGP 80
Query: 385 VLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXKTSFTVKMTKFDDKQKVALIKEV 206
L + L LP T+F VK+ KF+ K+ +IKEV
Sbjct: 81 ALNEHLRLPKQQMISSDGIGAKQDTGAGNVEEKKEK--TAFDVKLEKFNASDKIKVIKEV 138
Query: 205 Q 203
+
Sbjct: 139 R 139
>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
kinase, putative
Length = 980
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 167 LACTKLNPSRRPLXFFDQCHFLFVIKFRHFNCKTGLH 277
L CT+ NPS RP D H + +K F C + LH
Sbjct: 933 LVCTQYNPSTRP-DMLDVAHEMGRLKEYLFACPSLLH 968
>At4g20470.1 68417.m02986 hypothetical protein
Length = 140
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 10 TKFFFFSTQCXFSLCL-FNFSHGSNFGSCL 96
T FFFF FSL L F+FS S SCL
Sbjct: 62 TFFFFFRFSSIFSLSLFFSFSQKSLLRSCL 91
>At1g42980.1 68414.m04948 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains Pfam
profile PF02181: Formin Homology 2 Domain
Length = 299
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -1
Query: 545 IKMFCSSAGGNTNSHTSDYPSS*RRR*TCFA*NREDRLRNY*FKSLRSIRAESSIKKEIE 366
+ + + GG NS+ ++YPS R + A N R +KS I ++ +KEI
Sbjct: 230 LNILYAEVGGLVNSYIAEYPSGVRFK---EATNILTRFVETFYKSREEIERQAEAEKEIL 286
Query: 365 PARRSNY-ANGRI 330
R+ N NG +
Sbjct: 287 EKRKMNIKQNGNL 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,944
Number of Sequences: 28952
Number of extensions: 200709
Number of successful extensions: 569
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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