Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B15
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    80   2e-16
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   5.0  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 50/149 (33%), Positives = 65/149 (43%)
 Frame = -3

Query: 612 TLTRFYTXXXXXXXXXXXXXXXXXXXXHQTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXX 433
           TL RF++                    H  GS+NPLG+  N+D+IP +P++  KD     
Sbjct: 175 TLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPLGVTANMDRIPMNPYYLIKDLITIF 234

Query: 432 XXXXXXXXXXXINPYLLGDPDNFTPANPLVTPVHIQPE*YFLFAYAILRSIPNKLGGVXX 253
                       NPY   +PD   PA+PL TP+ I PE Y L  YAILR+IPN   GV  
Sbjct: 235 IFLIGINYMAFYNPYGFMEPDCALPADPLKTPMSIVPEWYLLPFYAILRAIPNFQLGVIA 294

Query: 252 XXXXXXXXXXLPFTFKKKIQGIQFYPINQ 166
                     LP      I+G  F P  +
Sbjct: 295 MLLSILVLLLLPLLDFSAIRGNSFNPFGK 323


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 157 LNILSNYNFINMNRSPTWRKARDD 86
           LN+L   N INM+  P+ ++A+DD
Sbjct: 484 LNLLQADNSINMSDVPSTKEAKDD 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,934
Number of Sequences: 5004
Number of extensions: 23354
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)