Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B14
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 376 VFSIRTY*SERNVVNKTTHNYIACSSRIKLNIR 474
           V  +RT+  E+  V K       CS ++K++ R
Sbjct: 192 VIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTR 224


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 45  HILNDFKIWRHTKKKI 92
           HI N FKI + T +KI
Sbjct: 58  HIQNIFKIIKSTNEKI 73


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 45 HILNDFKIWRHTKKKI 92
          HI N FKI + T +KI
Sbjct: 41 HIQNIFKIIKSTNEKI 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,111
Number of Sequences: 438
Number of extensions: 2077
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)