Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B13
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25466| Best HMM Match : HlyIII (HMM E-Value=1.6e-22)                32   0.48 
SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_25466| Best HMM Match : HlyIII (HMM E-Value=1.6e-22)
          Length = 382

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 35  LFCCCSQMCLHCSFXLXHRVPXVFVLHRLQSSLF 136
           LFCC S+ C H  F L +    VF L   Q+  F
Sbjct: 137 LFCCLSEECRHICFYLDYAAISVFTLTAAQAFYF 170


>SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 434 TKYL*MYIRNFLKLFIIIT**V--SFKTYIIVTYFALFNLNVFKTNI*SKCHIIFITCIE 261
           T  L + + +F  LF+I++  V  +  T++ V +    + NVF TN+  K   +  T +E
Sbjct: 231 TAKLLLELEDFEVLFMILSFIVINNLSTFVCVVFIYYLSSNVFSTNLPQKAAQVLQTLLE 290

Query: 260 FN 255
            N
Sbjct: 291 EN 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,837
Number of Sequences: 59808
Number of extensions: 204919
Number of successful extensions: 426
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)