Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B13
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 369 NLLSNYNK*FKKVTNIHSQILSFIYLK 449
           +LLSNYNK  + V N+   +   I LK
Sbjct: 31  DLLSNYNKLVRPVVNVTDALTVKIKLK 57


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 438 IYLKKYFYINMQI 476
           +YL+KYFY+ M++
Sbjct: 533 VYLQKYFYLFMEM 545


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 438 IYLKKYFYINMQI 476
           +YL+KYFY+ M++
Sbjct: 533 VYLQKYFYLFMEM 545


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 369 NLLSNYNK*FKKVTNIHSQILSFIYLK 449
           +LLSNYNK  + V N    +   I LK
Sbjct: 35  DLLSNYNKLVRPVVNTSDVLRVCIKLK 61


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 369 NLLSNYNK*FKKVTNIHSQILSFIYLK 449
           +LLSNYNK  + V N    +   I LK
Sbjct: 35  DLLSNYNKLVRPVVNTSDVLRVCIKLK 61


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 327 KKSEICNYYVSFKANLLSNYNK*FKKV 407
           K S   NY  ++  N  +NYN  +KK+
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 327 KKSEICNYYVSFKANLLSNYNK*FKKV 407
           K S   NY  ++  N  +NYN  +KK+
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 369 NLLSNYNK*FKKVTNIHSQILSFIYLKKYFYINMQI 476
           +LLSNYN+  + V+N +  ++  + L+    I++ +
Sbjct: 27  DLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNL 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,420
Number of Sequences: 438
Number of extensions: 2193
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)