Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B12
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)                 29   5.7  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   5.7  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   9.9  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 522 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 394
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 618 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 749
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 107 LLAAYLCMR*KKSPRSIKRDKQSYDEHKRKLNFISRLNMLKQQNKIY 247
           L+A  LC R   S  ++ +  Q  D HK+ L    +++M ++Q + Y
Sbjct: 768 LMACLLCKRQLPSREALDKHMQFSDLHKQNLEIHKKMSMTEEQREEY 814


>SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)
          Length = 235

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = -3

Query: 771 VVCVVXAQALTDEQKENLKKHRADCLSETKADEQLVNKLK--TGDFKTE--NEPLKKYAL 604
           V  V+      +E +EN+    AD  S +  DE +VNK    T     +  N+P      
Sbjct: 28  VTGVISLYLFREELRENVADEVADVASRSLGDENVVNKANEVTKQVLQDIINDPETTRLA 87

Query: 603 CMLIKSQLMTKD-GKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSP 460
              + S L   D  K   ++ L  + N E + KV K+    L +  N P
Sbjct: 88  SNFVMSVLGQDDVRKSAVELTLFVLQNRETQAKVSKVAAQTLKDLINHP 136


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -2

Query: 361  LISVK*LGRVYLDDIMIISENIAILYGVIILTLIYIC-SINFVLLF*HIQSRNEI*FSFV 185
            +IS+  +  +++  I++I   I I+  +II+T+I I  +I F+++   I     I    +
Sbjct: 2154 IISIIVIIVIFIVIIIVIVLTITIIIAIIIVTIIVITINIIFIVIVIIISIIGIIIVIII 2213

Query: 184  FIIALFI 164
            FII +FI
Sbjct: 2214 FIIVIFI 2220


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = -3

Query: 582 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 454
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +1

Query: 403 SVLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 582
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 583 L 585
           +
Sbjct: 84  I 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,144,055
Number of Sequences: 59808
Number of extensions: 449588
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)