Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B11
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)             190   8e-49
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)            66   1e-11
SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   8e-06
SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.015
SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30)                    28   4.0  
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             27   6.9  
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   27   6.9  
SB_1635| Best HMM Match : S1FA (HMM E-Value=1.6)                       27   6.9  

>SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score =  190 bits (462), Expect = 8e-49
 Identities = 85/141 (60%), Positives = 110/141 (78%)
 Frame = -1

Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 337
           I GPD  VI+  ERE+SG YTF+A   G Y YCFSNKMS+MTPKV+ F+++IGE    + 
Sbjct: 19  IIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAPKDTS 78

Query: 336 NEXEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVL 157
            E  A H+KL +M+ +L+  +  +KH+QEYM+VR+RIHRSIN++TNSRVV WS FE+ VL
Sbjct: 79  KEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVL 138

Query: 156 LVMTIGQVYYLKRFFEVQRVV 94
           + MT+GQVYYLKRFFEV+RVV
Sbjct: 139 VAMTLGQVYYLKRFFEVRRVV 159


>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
 Frame = -1

Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF---SNKMSSMTPKVVMFNLEIGEPQT 346
           +  P+G +I      S G +TF++ T G++  C    S + S      +  +L+I   + 
Sbjct: 202 VKDPNGKIIMSKYYSSEGRFTFTSHTPGEHVICLHSNSTRWSLWAGGRLRIHLDIQVGEH 261

Query: 345 KSGNEXEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSI 175
            +     A  +KL ++   I++L   +  I  +Q Y + R+   R  +ESTN RV+ W++
Sbjct: 262 ANDYAQIAAKDKLTELQLRIRQLLDQVEQISKEQNYQRFREERFRMTSESTNQRVLWWAL 321

Query: 174 FEASVLLVMTIGQVYYLKRFFEVQRVV 94
            +  +LL     Q+ +LK FFE +++V
Sbjct: 322 AQTVILLATGFWQMRHLKGFFEAKKLV 348


>SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
 Frame = -1

Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 337
           +  P G +  +    +   ++      G+Y +CF N  S++  K +  +L +        
Sbjct: 95  LQAPSGKIAIEDGHRTDEAHSLVTEEEGEYEFCFDNTFSTVASKAIFADLGVDFEDDIQK 154

Query: 336 NEXEADHNKLEDMIKELATTLRTIKHD---QEYMQ--VRDRIHRSIN--ESTNSRVVMWS 178
                D N  ED+      TL  ++ D    E++Q  +     R     +S +SRV  WS
Sbjct: 155 MIGIKDENLEEDLHDRFVRTLENVRVDLDKAEHIQNFISSAAARDFRLAKSKDSRVFWWS 214

Query: 177 IFEASVLLVMTIGQVYYLKRFF 112
           + ++  L+ + I QV  +K FF
Sbjct: 215 LIQSVALIGVAIVQVNVVKHFF 236


>SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 24/90 (26%), Positives = 43/90 (47%)
 Frame = -1

Query: 492 IHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEXEADHN 313
           ++  +++    +TF+    G Y +CFSN+ S+++ K V F+ + GE +T+        H 
Sbjct: 74  LYSVQKKQYDSHTFTVEQPGIYKFCFSNEFSTISHKTVYFDFQSGE-ETQLTKTMGNHHT 132

Query: 312 KLEDMIKELATTLRTIKHDQEYMQVRDRIH 223
            L  M     T    +K   +Y Q   R+H
Sbjct: 133 ALTQMETACVTIHENLKIAIDY-QTHHRLH 161


>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = -1

Query: 210 ESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFFEVQRVV 94
           EST +R++   +F   +L+++T GQ+ YL RFF  ++++
Sbjct: 347 ESTGARILYLGVFLTMLLVMLTGGQLVYLHRFFAAKKLI 385


>SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 309 LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIF 172
           LED   EL T+L+ I  DQE  +   R+   +NE+ NS++   S F
Sbjct: 70  LEDFKYELHTSLQVIFCDQEMGEGAKRLQSYVNENDNSKIQNQSYF 115


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 387  KVVMFNLEIGEPQTKSGNEXEADHNKLEDMIKELATTLRTIKHDQEYMQVR 235
            +  + +L+    Q K  N  E +  +LE  I ELA T+ T++ + E  QVR
Sbjct: 1671 RATVASLQKSLDQAKKKNHEEEE--RLEAEIAELANTVETLRTELEQSQVR 1719


>SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30)
          Length = 302

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -1

Query: 201 NSRVVMWSIFEASVLLVMTIGQVYYLKRFFEVQRVV*C**TYFTLHMLVCEVLYDI 34
           +S VV+WSI  +   +++  G    +  FF  ++++    +YF + + V ++L  I
Sbjct: 2   SSGVVLWSIAYSCAAIIIVSGNSLAIAAFFTSKKLMRMRASYFLVSLAVADMLIGI 57


>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = -1

Query: 276  LRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLV 151
            +R I+H   +++  +  H+ I++    +V +W I  A  + +
Sbjct: 986  MRVIEHINRFLEANNTAHKVISKEAAKQVTIWYIASAQQITI 1027


>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 510 GPDGNVIHKAERESSGIYTFS-APTAGKYTYCFSNKMS 400
           GPDG    KAE ESS I   S   TAG+  Y  S+  S
Sbjct: 780 GPDGAEATKAEEESSDIECDSDTSTAGRIDYRASSPSS 817


>SB_1635| Best HMM Match : S1FA (HMM E-Value=1.6)
          Length = 148

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 510 GPDGNVIHKAERESSGIYTFS-APTAGKYTYCFSNKMS 400
           GPDG    KAE ESS I   S   TAG+  Y  S+  S
Sbjct: 99  GPDGAEATKAEEESSDIECDSDTSTAGRIDYRASSPSS 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,863
Number of Sequences: 59808
Number of extensions: 283013
Number of successful extensions: 841
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)