Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B11
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   10.0 

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -1

Query: 432 KYTYCFSNKMSSMTPKVVMFNLEIGEP-QTKSGNEXEADHNKLEDMIKELATT 277
           +Y  CF +  S +TP  V F   I E  QT+     E     L D + E  TT
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNL-DKLAEWFTT 95


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -1

Query: 432 KYTYCFSNKMSSMTPKVVMFNLEIGEP-QTKSGNEXEADHNKLEDMIKELATT 277
           +Y  CF +  S +TP  V F   I E  QT+     E     L D + E  TT
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNL-DKLAEWFTT 95


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 112 KKPLEIVDLSDSHDKQY*SLKYRPHHY 192
           K+P  I  LS++++    +  Y+P HY
Sbjct: 310 KEPKIISSLSNNYNYNNYNNNYKPLHY 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,278
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)