Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B11
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain... 79 2e-15
At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar ... 66 2e-11
At3g07680.1 68416.m00921 emp24/gp25L/p24 family protein similar ... 65 3e-11
At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar ... 64 4e-11
At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar ... 64 5e-11
At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar ... 59 2e-09
At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ... 58 3e-09
At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar ... 57 6e-09
At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar ... 56 2e-08
At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar ... 52 3e-07
At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar ... 51 5e-07
At2g03040.1 68415.m00257 transmembrane protein-related low simil... 32 0.20
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai... 30 1.1
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino... 28 3.2
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 28 4.3
At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ fami... 28 4.3
At4g00920.1 68417.m00125 COP1-interacting protein-related simila... 27 7.5
At1g75850.1 68414.m08810 vacuolar protein sorting-associated pro... 27 7.5
At3g17860.2 68416.m02277 expressed protein 27 9.9
At1g74140.1 68414.m08587 hypothetical protein 27 9.9
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 27 9.9
>At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains
weak similarity to transmembrane protein (GI:1212965)
[Homo sapiens]
Length = 214
Score = 78.6 bits (185), Expect = 2e-15
Identities = 40/135 (29%), Positives = 68/135 (50%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 337
+ P GN++ + S + F AP +G Y +CF N S TP+ V F + +G +
Sbjct: 73 VTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYS--TPETVSFYIHVGHIPNEHD 130
Query: 336 NEXEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVL 157
+ + + I EL L ++ +Q+Y++ RD HR NEST RV+ +++ E L
Sbjct: 131 LAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVIFYTVGEYIFL 190
Query: 156 LVMTIGQVYYLKRFF 112
+ QV Y+++ F
Sbjct: 191 AAASGLQVLYIRKLF 205
>At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 65.7 bits (153), Expect = 2e-11
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 337
+ P G V+H E ++G + F+ +G Y CF S K N++
Sbjct: 69 VTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKD 128
Query: 336 NEXEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEA 166
+ A K+E + K+L + I + Y++ R+ R ++E TNSRV +SI
Sbjct: 129 WDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYSIMSL 188
Query: 165 SVLLVMTIGQVYYLKRFFEVQRVV 94
+ +V++ Q+ YLK++FE ++++
Sbjct: 189 GICIVVSGLQILYLKQYFEKKKLI 212
>At3g07680.1 68416.m00921 emp24/gp25L/p24 family protein similar to
SP|Q15363 Cop-coated vesicle membrane protein p24
precursor (p24A) {Homo sapiens}; contains Pfam profile
PF01105: emp24/gp25L/p24 family
Length = 208
Score = 64.9 bits (151), Expect = 3e-11
Identities = 37/136 (27%), Positives = 66/136 (48%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 337
I GP G IH + S + F G Y +CF+NK S + + F++++G
Sbjct: 67 IHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNK--SPYHETIDFDVQLGHFAYYDQ 124
Query: 336 NEXEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVL 157
+ + L + I +L L I+ +Q +++ + +NE+ + R V ++FE+ L
Sbjct: 125 HAKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFAL 184
Query: 156 LVMTIGQVYYLKRFFE 109
+ + QVY L+R FE
Sbjct: 185 IGASFLQVYLLRRLFE 200
>At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 217
Score = 64.5 bits (150), Expect = 4e-11
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 337
+ P GN +H E + G + F+ +G Y CF S K V N++
Sbjct: 74 VTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKD 133
Query: 336 NEXEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEA 166
A K+E + I++L + I + Y++ R+ R+++E TNSRV +SI
Sbjct: 134 WASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSIMSL 193
Query: 165 SVLLVMTIGQVYYLKRFFEVQRVV 94
V + ++ QV YLK++FE ++++
Sbjct: 194 GVCIAVSGFQVLYLKQYFEKKKLI 217
>At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile PF01105: emp24/gp25L/p24
family
Length = 216
Score = 64.1 bits (149), Expect = 5e-11
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSG 337
+ P GN +H E + G + F+ AG Y CF S + ++
Sbjct: 73 VTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKD 132
Query: 336 NEXEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEA 166
+ A K+E + ++ L + +I+ + Y++ R+ R ++E+TNSRV +SI
Sbjct: 133 WDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIMSL 192
Query: 165 SVLLVMTIGQVYYLKRFFEVQRVV 94
V +V+ Q+ YLKR+F ++++
Sbjct: 193 GVCVVVVGSQILYLKRYFHKKKLI 216
>At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105:
emp24/gp25L/p24 family
Length = 214
Score = 59.3 bits (137), Expect = 2e-09
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Frame = -1
Query: 501 GNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVM---FNLEIGEPQTKSGNE 331
GN H AE+ SG + FSA AG Y CF+ P+V + F + G N
Sbjct: 77 GNNYHHAEQVDSGQFAFSAVEAGDYMACFT--AVDHKPEVSLSIDFEWKTGVQSKSWANV 134
Query: 330 XEADHNK-LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLL 154
+ + +E +K L T+ +I + Y++ R+ + +N STN+++ S+ V +
Sbjct: 135 AKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLSVLSFFVCI 194
Query: 153 VMTIGQVYYLKRFFEVQRVV 94
+ Q +LK FFE ++V+
Sbjct: 195 GVAGMQFLHLKTFFEKKKVI 214
>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 170
Score = 58.4 bits (135), Expect = 3e-09
Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = -1
Query: 507 PDGNVIHKAERESSGIYTFSAPTAGKYTYCFSN-KMSSMTPKVVMFNLEIGEPQTKSGNE 331
P G +H+A++ +G ++F+A G Y C + T + F+ + G + N
Sbjct: 31 PQGKNLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNV 90
Query: 330 XEADH-NKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLL 154
+ + +E +K L T+ +I + Y++ R+ + +N STNS++ W F + V+
Sbjct: 91 AKKSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMA-WLSFGSLVVC 149
Query: 153 VMTIG-QVYYLKRFFEVQRVV 94
+ G Q ++LK FFE ++++
Sbjct: 150 LSVAGLQFWHLKTFFEKKKLI 170
>At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 214
Score = 57.2 bits (132), Expect = 6e-09
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Frame = -1
Query: 501 GNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVM---FNLEIGEPQTKSGNE 331
GN H AE SG + F+A +G Y C++ P+V + F+ G Q+KS +
Sbjct: 77 GNTYHHAEDVESGQFAFTAVESGDYMACYT--AVDHKPEVTLSIDFDWRTGV-QSKSWSS 133
Query: 330 XEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASV 160
A +++E M +K L T+ +I + Y++ R+ +++N +TNS++ S V
Sbjct: 134 V-AKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLFV 192
Query: 159 LLVMTIGQVYYLKRFFEVQRVV 94
L + Q +LK FFE ++V+
Sbjct: 193 CLGVAGMQFVHLKTFFEKKKVI 214
>At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 55.6 bits (128), Expect = 2e-08
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSN-KMSSMTPKVVMFNLEIG-EPQTK 343
+ P G H+++ SG ++F A G Y CFS T ++ F+ G +
Sbjct: 70 VTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTGIHTKDW 129
Query: 342 SGNEXEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEAS 163
S ++ +E +K+L T+ I + Y++ R+ ++N +TNS++ S +
Sbjct: 130 SNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWLSFVSLA 189
Query: 162 VLLVMTIGQVYYLKRFFEVQRVV 94
V L + Q ++LK FF+ ++++
Sbjct: 190 VCLSVAGLQFWHLKTFFQKKKLI 212
>At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105
emp24/gp25L/p24 family
Length = 204
Score = 51.6 bits (118), Expect = 3e-07
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPK-VVMFNLEIG-EPQTK 343
+ P G H AE SG + F+A G Y CF T K V F + G E +
Sbjct: 62 VSSPKGKSHHHAENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAKDW 121
Query: 342 SGNEXEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEAS 163
+ LE +++L TI + + R+R + +N STNSR+ S+
Sbjct: 122 TTIAKRGQITMLEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLSFV 181
Query: 162 VLLVMTIGQVYYLKRFFEVQRVV 94
V + + Q+ +LK F E ++++
Sbjct: 182 VTMSVAGLQLRHLKSFLERKKLL 204
>At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile: PF01105 emp24/gp25L/p24
family; contains non-consensus TG acceptor splice site
at exon 3
Length = 217
Score = 50.8 bits (116), Expect = 5e-07
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Frame = -1
Query: 516 IXGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKV---VMFNLEIGEPQT 346
+ P G ++K + G F+ +G + C + V V+ +L+
Sbjct: 71 VTSPYGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIR 130
Query: 345 KSGNEXEADHNKLEDMIKELATTLR---TIKHDQEYMQVRDRIHRSINESTNSRVVMWSI 175
+ A K+E M E+ + I+ + Y+++R+ R INE TN+RV +
Sbjct: 131 AKDWDSVAKKEKIEAMELEIRRSTEYASAIRANILYLRIREAYMREINEKTNTRVNQLGL 190
Query: 174 FEASVLLVMTIGQVYYLKRFFEVQRVV 94
V +V++I QV YLKR+F ++++
Sbjct: 191 MSLGVAIVVSISQVLYLKRYFLKKKLI 217
>At2g03040.1 68415.m00257 transmembrane protein-related low
similarity to SP|Q28735|TM21_RABIT Transmembrane protein
Tmp21 precursor (21 kDa Transmembrane trafficking
protein) (Integral membrane protein p23) {Oryctolagus
cuniculus}
Length = 166
Score = 32.3 bits (70), Expect = 0.20
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -1
Query: 507 PDGNVIHKAERESSGIYTFSAPTAGKYTYCFSN-KMSSMTPKVVMFNLEIGEPQTKSGN- 334
P G +H+A+ +G ++F+A G Y C + T + F+ + G + N
Sbjct: 74 PQGKNLHEADNVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNV 133
Query: 333 EXEADHNKLEDMIKELATTLRTIKHDQEYMQVR 235
++ + +E +K L T+ +I + Y++ R
Sbjct: 134 AKKSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166
>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
Pfam domain, PF04935: Surfeit locus protein 6
Length = 386
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 336 NEXEADHNKLEDMIKELATTLRTIKHDQE--YMQVRDRIHRSINESTNSR 193
++ E D+N+L D + T K D+ Y ++R+R+HR I+E R
Sbjct: 135 SKKETDNNRLNDDDSKEETDNNRQKDDRSVTYEELRERLHRKIDELKGGR 184
>At1g44820.1 68414.m05134 aminoacylase, putative /
N-acyl-L-amino-acid amidohydrolase, putative similar to
aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
ACY-1)[Homo sapiens] SWISS-PROT:Q03154
Length = 438
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = -1
Query: 393 TPKVVMFNLEIGEPQTKSGNEXE----ADHNKLEDMI-KELATTLRTIKHD-QEYMQVRD 232
TP F + + + ++G + AD + ++ I +E A ++R + + QE ++RD
Sbjct: 276 TPTTTGFVMNMQPSEAEAGYDLRLPPMADPDVMKKRIAEEWAPSIRNMTYSIQEKGKLRD 335
Query: 231 RIHRSINESTNSRVVMWSIFEASV 160
+ R I N WSIF+ +V
Sbjct: 336 HLGRPIMTPVNDSNPWWSIFKQAV 359
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 333 EXEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINES 205
E E D K+E + +R HD ++++ + I R NE+
Sbjct: 660 EPEEDIKKIEPFVTVRDGIIRHFSHDHHHLKLDENIDRDYNEN 702
>At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ family
contains Pfam profile: PF01960 ArgJ family
Length = 468
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -1
Query: 480 ERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEXEADHNKLED 301
E ++G++T + A YC +S T + V+ N G+ +G +A + + D
Sbjct: 98 EAVAAGVFTTNVVAAAPVVYCKKVLETSKTARAVLIN--AGQANAATG---DAGYQDMLD 152
Query: 300 MIKELATTLR 271
+ +AT L+
Sbjct: 153 CVGSIATLLK 162
>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646
Length = 314
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -1
Query: 348 TKSGNEXEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINEST 202
TK+ +AD + E+A++ R + HD +++ + + + +ST
Sbjct: 251 TKNNGGKDADDKASTKEVTEVASSSRNVDHDVVMGDLQENVEKVVKKST 299
>At1g75850.1 68414.m08810 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 838
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 483 AERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEI--GEPQTKSGN 334
A R SSG T KY Y F +TP + +E+ E Q+ +GN
Sbjct: 752 ATRGSSGPVTLFVEILNKYIYFFEKGNPHITPSDIQSLIELINNEMQSDNGN 803
>At3g17860.2 68416.m02277 expressed protein
Length = 339
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 459 YTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGN 334
++F AP G + FSNK+S+ + + + F + KSGN
Sbjct: 12 FSFVAPNRGM-NWSFSNKVSASSSQFLSFRPTQEDRHRKSGN 52
>At1g74140.1 68414.m08587 hypothetical protein
Length = 277
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 186 MWSIFEASVLLVMTIGQVYYLKRFF 112
MW + + S ++ T+G +Y LK +F
Sbjct: 137 MWRVSDRSWMIARTLGPLYLLKLYF 161
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 482 QRGSHLVFIHFLLQLQGSILIAS-VIKCHP*HPRW 381
+ G+H+VFIH QL G L+ + V P RW
Sbjct: 376 ESGNHVVFIHMDDQLDGKTLVGTYVCTDQPGEFRW 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,436,864
Number of Sequences: 28952
Number of extensions: 190491
Number of successful extensions: 517
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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