Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B09
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 1.1
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 2.4
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 25 4.3
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 4.3
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 5.6
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 25 5.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 5.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 7.4
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 24 7.4
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 24 7.4
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 24 9.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 24 9.8
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 24 9.8
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 24 9.8
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 140 SMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGP 265
S SARS AR+ RS+S + NT PP P
Sbjct: 204 SRSSARSTARSAPRSTQRSRSSSANPVTTPPVNNTLLTPPAP 245
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 278 MWSGEAQEVARTYCGSHLADTLADLCFG 195
+W E + R Y G L + L CFG
Sbjct: 409 LWDLEENRIVRQYMGHKLGNFLIGSCFG 436
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 4.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 94 RKQHSSTTPRFPRDPKYA 147
+K+H + P FPRD +Y+
Sbjct: 140 KKEHFNKKPSFPRDTEYS 157
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -2
Query: 230 HLADTLADLCFGVVKRGGAQYAPYFWQKAYLGSRGKR 120
HL DT D FG+V + Y Q YLG R R
Sbjct: 277 HLPDTTVDAAFGLVSLFILFFTKYMCQ--YLGKRYPR 311
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 24.6 bits (51), Expect = 5.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 76 TSSVQGRKQ--HSSTTPRFPRDPKYAFCQK*GAY*APPRFTTPKHKSASVSAK*DPQ 240
+SS+Q ++ H ST+ DP K + + PR +TP S VSA +P+
Sbjct: 246 SSSLQHTRENLHDSTSSLRDHDPSLLSSSK--FFRSSPRCSTPSVSSTFVSATSEPE 300
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 5.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 179 HRVSPLRSTSRRVYPP 226
HR++PLR+ ++YPP
Sbjct: 89 HRMTPLRNVWPKLYPP 104
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 200 STSRRVYPPSEIRNTYALPPGP 265
S + R Y PS R TY++PP P
Sbjct: 68 SKATRPYIPSYTRLTYSVPPLP 89
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.2 bits (50), Expect = 7.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 338 PLKRTTMKTSVIFVLIVLNLMWSGEAQEVARTYCGSHL 225
PL+R T ++ IV W E VA+ Y GS L
Sbjct: 1177 PLRRRTKVSAKAANKIVQTHEWHPEGSRVAQIYLGSLL 1214
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 105 FVHYAAFPARSQVCFLPEVGRVLSTTAFH 191
F+ FP S V L E+ RVL T ++H
Sbjct: 220 FIGRPLFPGDSSVEQLVEIIRVLGTPSYH 248
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 80 QVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPL 196
Q C G ++ VS P++LSA + + T R P+
Sbjct: 571 QYCWNGTTVNNPSAVSNYAPTVLSASTTSGTSSVRAKPI 609
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 272 SGEAQEVARTYCGSHLADTLADLCFGVVKR 183
SG+ E + G+H+A T+A +GV K+
Sbjct: 243 SGDVDEDNNGH-GTHVAGTIASRAYGVAKK 271
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 380 SNNYFRLIRTFLQNPL 333
SN F L+ F+QNPL
Sbjct: 578 SNQVFTLLSNFIQNPL 593
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 372 LLSTDKDFSTKSFKKNHNEDFSNFCINRAQP 280
+LS + DFSTK N F N + P
Sbjct: 368 VLSMENDFSTKKMSSNIGHVFQNETVKYVFP 398
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 25 VQFAGHVEILYPQYDARTSSVQGRKQHSSTTPRFPRDPK 141
V FA H + + D ++ S + HS+ F D K
Sbjct: 113 VSFASHARVRWYPKDHQSDSEKSTSNHSTPERTFASDAK 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,974
Number of Sequences: 5004
Number of extensions: 31708
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -