Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B09
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 31 0.34
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810... 31 0.44
03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508... 29 1.8
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831... 28 2.4
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 28 3.1
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150... 27 5.5
10_08_0080 - 14707309-14707420,14707799-14707846,14708418-147085... 27 7.2
07_03_0141 + 14249788-14249992,14250240-14250295 27 7.2
07_03_0140 + 14238645-14238849,14239081-14239163 27 7.2
03_05_0519 - 25131614-25134778 27 7.2
03_01_0528 + 3966687-3967643 27 7.2
12_02_0027 + 12427525-12427698,12430082-12430150,12430763-124308... 26 9.6
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 26 9.6
09_06_0278 + 21991016-21992120,21992341-21992702,21992766-219934... 26 9.6
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 31.1 bits (67), Expect = 0.34
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 181 VVLSTRPTSGRKHTWDLAGNAA*WTNAVSGLAHLTFSHRTAD 56
++++TRPT+G W +A W A++G ++ H TA+
Sbjct: 243 LLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAE 284
>09_04_0323 -
16679565-16679939,16680328-16680660,16680721-16681032,
16683590-16683825,16683972-16684239
Length = 507
Score = 30.7 bits (66), Expect = 0.44
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +2
Query: 59 RSTMRERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIR 238
RS RQ + P+ ++L + ART R+ P R S +PP
Sbjct: 16 RSAAGRRQAARDKGKEEPVTLPPLPPAAVLGSSPAART---RLRPRRRPSSAPHPPPAAA 72
Query: 239 NTYALPPGPHLTTS 280
+T AL P PH S
Sbjct: 73 STSALRPRPHTQNS 86
>03_02_0026 -
5086596-5086755,5087035-5087105,5087407-5087466,
5087625-5087684,5088012-5088054,5088130-5088221,
5088304-5088372,5088458-5088502,5089209-5089317,
5089579-5089679,5089769-5089861,5089936-5089996,
5090084-5090187,5091592-5091972
Length = 482
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 288 AQPDVVR*GPGGSAYVLRISLGGYTRRLVLRSGETRWCSVRALLLAESI 142
A P ++R P S + + LGG R+ + R+G + S RAL+L E +
Sbjct: 427 AIPVILRSSPDRSGFSVSDCLGGTVRQTIARAGRLQTWS-RALILLEPL 474
>07_03_0153 -
14481421-14481506,14481933-14482111,14483046-14483130,
14483301-14483499,14484222-14484292,14484380-14484486,
14484571-14484703,14484870-14485020,14485147-14485249,
14485330-14485438,14485587-14485746,14486293-14486394,
14486892-14487009,14487596-14487750,14487850-14487948,
14488078-14488167
Length = 648
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 360 DKDFSTKSFK--KNHNEDFSNFCINRAQPDVVR*GPGGSAYV 241
D D ST+ +K KNH++D +N +R P +AYV
Sbjct: 549 DTDLSTRPYKTLKNHSKDITNVTFHRKYPLFASSSEDCTAYV 590
>07_01_0780 +
6047375-6047494,6047603-6047713,6047804-6047926,
6048035-6048168,6048273-6049551
Length = 588
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 108 VHYAAFPARSQVCFLPEVGRVLSTTAFHHSEAQVGECIR 224
+H A F R F+P++ R+L + + EA+ CI+
Sbjct: 270 LHQAPFDDRCHCHFIPDMDRILGIQSRNDDEARWRNCIK 308
>03_06_0367 -
33413530-33413710,33414347-33414681,33414908-33415023,
33415107-33415235,33415657-33415723,33415780-33415854,
33416054-33416149,33416404-33416592
Length = 395
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -2
Query: 248 RTYCGSH-LADTLADLCFGVV 189
R Y G H L D +A +CFGVV
Sbjct: 144 RIYLGMHSLIDVIAGICFGVV 164
>10_08_0080 -
14707309-14707420,14707799-14707846,14708418-14708543,
14708586-14708743
Length = 147
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 110 PLRRVS-REIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHLTT 277
PL RV+ R PS+ R + LR++SRR PS R + PGP T
Sbjct: 20 PLSRVNARRSPSLDQRRRYRASTAGPPQSLRASSRRGGSPSLTRRSSPEKPGPFSQT 76
>07_03_0141 + 14249788-14249992,14250240-14250295
Length = 86
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -2
Query: 332 KRTTMKTSVIFVLIVLNLMWSGEAQEVARTYCGSHLADTLADLCFGVVKRGGA 174
KRTT + VI L++L+L CG ++ CFG + GG+
Sbjct: 4 KRTTT-SMVIMCLVILSLT----VDSATAAQCGCCISSRAKACCFGCIAAGGS 51
>07_03_0140 + 14238645-14238849,14239081-14239163
Length = 95
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -2
Query: 332 KRTTMKTSVIFVLIVLNLMWSGEAQEVARTYCGSHLADTLADLCFGVVKRGGA 174
KRTT + VI L++L+L CG ++ CFG + GG+
Sbjct: 4 KRTTT-SMVIMCLVILSLT----VDSATAAQCGCCISSRAKACCFGCIAAGGS 51
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 145 HTWDLAGNAA*WTNAVSGLAHLTFSHRTADRV 50
H+W + + A W V L+H+ + R A+RV
Sbjct: 841 HSWSMRRSKANWFRVVGCLSHVATAVRWANRV 872
>03_01_0528 + 3966687-3967643
Length = 318
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 146 LSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHLTTS 280
L+A+ H R+ L+++S P T A PP P L TS
Sbjct: 125 LNAQHNVHVIHQRLQELKNSSSSPTKPPPRTPTRANPPPPPLPTS 169
>12_02_0027 +
12427525-12427698,12430082-12430150,12430763-12430823,
12431147-12431264,12431346-12431422,12432881-12432996,
12433227-12433661
Length = 349
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 78 VKCARPETAFVHYAAFPARSQVCFLPEV-GRVLSTTA 185
++C RP+ +F +++++ + +L E GRVLS A
Sbjct: 195 LRCGRPKASFTYWSSYSVYLRGPYLVEFEGRVLSVCA 231
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 299 VLIVLNLMWSGEAQEVARTYCGSHLADTLADLCFGV 192
+LI + + +G+A V + GSH+ TL LC GV
Sbjct: 225 ILIRICKVIAGDAANVMSSCYGSHVLRTLLCLCKGV 260
>09_06_0278 +
21991016-21992120,21992341-21992702,21992766-21993459,
21994064-21994191
Length = 762
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 314 TSVIFVLIVLNLMWSGEAQ 258
T+ +++VL LMWS EAQ
Sbjct: 7 TAAALLVLVLQLMWSAEAQ 25
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,829
Number of Sequences: 37544
Number of extensions: 222538
Number of successful extensions: 779
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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