Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B09
(396 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41002| Best HMM Match : NCD3G (HMM E-Value=4.8) 31 0.26
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_21008| Best HMM Match : Insulin (HMM E-Value=0.0061) 27 4.2
SB_14479| Best HMM Match : Insulin (HMM E-Value=2.2) 27 4.2
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 27 4.2
SB_759| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 27 5.5
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 27 5.5
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
>SB_41002| Best HMM Match : NCD3G (HMM E-Value=4.8)
Length = 116
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 59 RSTMRERQVCKAGNSIRPLRRVSRE-IPSMLSARSRARTEHHRVSPLRS 202
R T +V N I L R S+E + +LS RSR E+HR P +S
Sbjct: 47 RITYAHARVLAKTNKISVLNRSSKETLAGILSVRSRKCAEYHRRKPAKS 95
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +2
Query: 59 RSTMRERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIR 238
RS MR R+ A S R RR + S RS + + R SP R PP R
Sbjct: 820 RSPMRRRRSRDA--SPRRRRRSASGSDSSPHRRSESPRDRRRRSPEHRRRREASPPRRDR 877
Query: 239 NTYALPP 259
Y PP
Sbjct: 878 KRYDSPP 884
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 110 PLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHL 271
P +R + S ++A + A PLR + R PPS + + L PHL
Sbjct: 565 PCSSWTRSVFSWMTASTSATDPIASSKPLRFATSRRMPPSSLNSCLGLDQPPHL 618
>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1322
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 110 PLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSE 232
PLRR ++ P S+R+ + H + ++ +RV PPS+
Sbjct: 626 PLRRQTQPSPVSTSSRTSKKKLHEQEMITQAEGKRVAPPSD 666
>SB_21008| Best HMM Match : Insulin (HMM E-Value=0.0061)
Length = 179
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 143 YLGSRGKRGVVDECCFRPCTLDVLASYC 60
+L +R +V+ECC C ++ + YC
Sbjct: 147 FLRTRRSYDIVEECCNEGCAVEEVHEYC 174
>SB_14479| Best HMM Match : Insulin (HMM E-Value=2.2)
Length = 50
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 143 YLGSRGKRGVVDECCFRPCTLDVLASYC 60
+L +R +V+ECC C ++ + YC
Sbjct: 18 FLRTRRSYDIVEECCNEGCAVEEVHEYC 45
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 104 CCFRPCTLDVLASYCG*SIST 42
CC P +LD++A CG SI T
Sbjct: 176 CCGIPVSLDIVAEECGVSICT 196
>SB_759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 112 WTNAVSGLAHLTFSHRTADRVFLRDLQT 29
W+ + G HL + T D V +R LQT
Sbjct: 1225 WSEELQGSRHLLLEYFTEDSVLVRTLQT 1252
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 98 NSIRPLRRVS--REIPSMLSARSRARTEHHRVSPLRSTSRR 214
NS+ P RR RE S + RSR + E + VSP R + R
Sbjct: 271 NSVSPPRRSKGKREDNSASAPRSRGKREENSVSPPRRSKGR 311
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 68 MRERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLR 199
+R++ CK G R LR V + L+ + R E H ++P R
Sbjct: 1110 LRDKPACKHGLDNRALRTVILYVRLELTGAEQERGESHLLAPPR 1153
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 31 FAGHVEILYPQYDARTSSVQGRKQHSSTT---PRFPRDPKYAFCQK*GAY*APP 183
++ HV PQ D S G ++T PR PR + GA+ APP
Sbjct: 719 YSNHVPASRPQKDRSRSFTSGDTDPENSTKVAPRLPRKHSEHSSSRFGAHLAPP 772
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,119
Number of Sequences: 59808
Number of extensions: 255419
Number of successful extensions: 917
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -