Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B09
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70683-4|CAC42282.1| 109|Caenorhabditis elegans Hypothetical pr... 39 0.001
AF070472-1|AAC33275.1| 109|Caenorhabditis elegans insulin-like ... 39 0.001
Z69718-5|CAA93539.1| 236|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z69716-8|CAA93530.1| 236|Caenorhabditis elegans Hypothetical pr... 32 0.13
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 28 2.1
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 28 2.1
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 28 2.1
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 27 6.4
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 27 6.4
AF003136-6|AAK21375.2| 384|Caenorhabditis elegans Hypothetical ... 27 6.4
U88165-4|AAR30207.1| 700|Caenorhabditis elegans Maternal effect... 26 8.5
U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect... 26 8.5
U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein. 26 8.5
>Z70683-4|CAC42282.1| 109|Caenorhabditis elegans Hypothetical
protein F13B12.5 protein.
Length = 109
Score = 39.1 bits (87), Expect = 0.001
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = -2
Query: 329 RTTMKTSVIFVLIVLNLMWSGEAQEVARTYCGSHLADTLA-----DLCFGVV--KRGGAQ 171
R + S F + + L+ S + + CGS L TL LC G+ KR Q
Sbjct: 5 RQVYRPSFFFGFLAILLLSSPTPSDASIRLCGSRLTTTLLAVCRNQLCTGLTAFKRSADQ 64
Query: 170 -YAPYFWQKAYLGSRGKRG-VVDECCFRPCTLDVLASYC 60
YAP ++ + KRG + ECC + C+ L ++C
Sbjct: 65 SYAPTTRDLFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103
>AF070472-1|AAC33275.1| 109|Caenorhabditis elegans insulin-like
peptide protein.
Length = 109
Score = 39.1 bits (87), Expect = 0.001
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = -2
Query: 329 RTTMKTSVIFVLIVLNLMWSGEAQEVARTYCGSHLADTLA-----DLCFGVV--KRGGAQ 171
R + S F + + L+ S + + CGS L TL LC G+ KR Q
Sbjct: 5 RQVYRPSFFFGFLAILLLSSPTPSDASIRLCGSRLTTTLLAVCRNQLCTGLTAFKRSADQ 64
Query: 170 -YAPYFWQKAYLGSRGKRG-VVDECCFRPCTLDVLASYC 60
YAP ++ + KRG + ECC + C+ L ++C
Sbjct: 65 SYAPTTRDLFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103
>Z69718-5|CAA93539.1| 236|Caenorhabditis elegans Hypothetical
protein W06D11.1 protein.
Length = 236
Score = 32.3 bits (70), Expect = 0.13
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +2
Query: 104 IRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHLTT 277
+R + ++ + S+++ R A+ + R S L +TS+R++ E +Y LPP H+TT
Sbjct: 14 VRSIENMAGTLHSLVALRLFAKDMNTR-SQLVATSQRLHKELEPDKSYPLPPLSHITT 70
>Z69716-8|CAA93530.1| 236|Caenorhabditis elegans Hypothetical
protein W06D11.1 protein.
Length = 236
Score = 32.3 bits (70), Expect = 0.13
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +2
Query: 104 IRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRNTYALPPGPHLTT 277
+R + ++ + S+++ R A+ + R S L +TS+R++ E +Y LPP H+TT
Sbjct: 14 VRSIENMAGTLHSLVALRLFAKDMNTR-SQLVATSQRLHKELEPDKSYPLPPLSHITT 70
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 71 RERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRR 214
R R S P RR SR S RSR+R+ SP+R + RR
Sbjct: 88 RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 71 RERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRR 214
R R S P RR SR S RSR+R+ SP+R + RR
Sbjct: 88 RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 71 RERQVCKAGNSIRPLRRVSREIPSMLSARSRARTEHHRVSPLRSTSRR 214
R R S P RR SR S RSR+R+ SP+R + RR
Sbjct: 88 RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 134 IPSMLSARSRARTEHHRVSPLRSTS 208
+P+ LS+ S +HH VSPL + S
Sbjct: 2010 MPAYLSSNSSLPPQHHHVSPLSNDS 2034
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 134 IPSMLSARSRARTEHHRVSPLRSTS 208
+P+ LS+ S +HH VSPL + S
Sbjct: 2013 MPAYLSSNSSLPPQHHHVSPLSNDS 2037
>AF003136-6|AAK21375.2| 384|Caenorhabditis elegans Hypothetical
protein F28B3.3 protein.
Length = 384
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 200 STSRRVYPPSEIRNTYA--LPPGPHLT 274
S RR++PPS + T + LPP P L+
Sbjct: 45 SVHRRIFPPSGVARTPSSQLPPSPKLS 71
>U88165-4|AAR30207.1| 700|Caenorhabditis elegans Maternal effect
sterile protein3, isoform b protein.
Length = 700
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 122 VSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRN 241
+++ +PS ++ S A + +P+ S+SRR PP+++ N
Sbjct: 41 LNKSLPSTPTS-SEAGSSRESSNPVTSSSRRKNPPTKLEN 79
>U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect
sterile protein3, isoform a protein.
Length = 754
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 122 VSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRN 241
+++ +PS ++ S A + +P+ S+SRR PP+++ N
Sbjct: 41 LNKSLPSTPTS-SEAGSSRESSNPVTSSSRRKNPPTKLEN 79
>U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein.
Length = 754
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 122 VSREIPSMLSARSRARTEHHRVSPLRSTSRRVYPPSEIRN 241
+++ +PS ++ S A + +P+ S+SRR PP+++ N
Sbjct: 41 LNKSLPSTPTS-SEAGSSRESSNPVTSSSRRKNPPTKLEN 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,109,900
Number of Sequences: 27780
Number of extensions: 185321
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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