Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B08
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.5  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 670 PQFNYNYRNEKTXGN 626
           PQFN+NY+  +   N
Sbjct: 209 PQFNFNYQYNQAYSN 223


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 670 PQFNYNYRNEKTXGN 626
           PQFN+NY+  +   N
Sbjct: 229 PQFNFNYQYNQAYSN 243


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 563 NH*NMLLTETTLVPLFHFRVCFQNKSILWTLVYWIF 456
           NH  ++    TL  + +  V F N +  W + + IF
Sbjct: 192 NHLFLVRRTETLAQILNQTVNFYNSAFGWPIAFLIF 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,497
Number of Sequences: 336
Number of extensions: 3172
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)