Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B07
(428 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_26560| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-09) 29 1.6
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 1.6
SB_58836| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_12305| Best HMM Match : NAF1 (HMM E-Value=8) 28 3.8
SB_27284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_35308| Best HMM Match : VWA (HMM E-Value=1.1e-20) 27 6.6
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04) 27 6.6
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_17081| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5) 27 8.7
SB_25456| Best HMM Match : Collagen (HMM E-Value=1.3e-09) 27 8.7
>SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 262 GMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGG 366
G+SEH SC+ + + GD G GS GD GG
Sbjct: 215 GVSEHLGNKSCIDTNLNICGDGDDG--GSDGDGGG 247
>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 30.3 bits (65), Expect = 0.71
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 244 GGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGG 369
GGSG G S+ + ++G++S D+GSG+ GS D G G
Sbjct: 133 GGSGSGGSSDDGGS-GDNNNGVSSDDDDGSGSGGSSDDGGSG 173
>SB_26560| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-09)
Length = 556
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 238 LAGGSGVRGMSEHWSAISCVSSGITSVGDNGS---GAIGSVGDHGGG 369
+ G +G G AI G T GD+G+ GAIG GD+GGG
Sbjct: 487 IGGNNGAIGGDNDDGAIGG-DDGATVDGDDGAIGGGAIGDGGDNGGG 532
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 223 LRDHSL-AGGSGVRGMSEHWSAISCVSSGITSVGDNGSGA--IGSVGDHGGG 369
+R HS + SG+ G S H S+ +SG+ S+G S + G GD G G
Sbjct: 911 IRTHSTYSSRSGISGASSHSSSPRGTTSGVYSMGGGPSDSDDNGDRGDDGDG 962
>SB_58836| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 261 AYAAPASK--TVVSQSLSQSHPAQIAPLLAYAGHGLDYAHGLDYGHGLDY 118
++ P SK T S++ SQ A AP L + L+ AHG Y LD+
Sbjct: 3 SFTCPMSKERTAWSRAYSQKTCASFAPRLNAKENALNAAHGAKYTIPLDH 52
>SB_12305| Best HMM Match : NAF1 (HMM E-Value=8)
Length = 400
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 229 DHSLAGGS-GVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGY 372
D+ A S G RG WS + + +S G G A SVGD+G Y
Sbjct: 97 DYGAAYSSYGKRGGFARWS-VGDYGAAYSSYGKQGGFARWSVGDYGAAY 144
>SB_27284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 193 DLGGMGLAQRLRDHSLAG---GSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHG 363
D GG G+ +R D G G G ++ S G S GD+ SG +G G G
Sbjct: 38 DDGGDGVDERGGDDDSGGVGDDGGDDGGGDNDSGGFGDDGGDDSGGDDDSGGVGDDGGDG 97
Query: 364 GG 369
GG
Sbjct: 98 GG 99
>SB_35308| Best HMM Match : VWA (HMM E-Value=1.1e-20)
Length = 381
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +1
Query: 262 GMSEH-WSAISCVSS--GIT-SVGDNGSGAIGSVGDHGGG 369
G+SE S +S + S GI+ S G GSG G VG GGG
Sbjct: 275 GLSEKKGSLVSLIGSAGGISASGGAGGSGGAGGVGGGGGG 314
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 262 GMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGYV 375
G+ E A +C +S +G +G+G G+ H G Y+
Sbjct: 746 GVQEINKACNCTTSSSNLIGSSGAGWEGTALLHHGSYI 783
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 247 GSGVRGMSEHWSAISCVSSGITSVGDN-GSGAIGSVGDHGGG 369
G+ G + S S SG TS G N GSG S G+ G G
Sbjct: 515 GTSSNGGTTGSSTTSSGESGTTSTGGNTGSGTTSSGGNTGSG 556
>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
Length = 1481
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 208 GLAQRLRDHSLAGGSGV-RGMSEHWSAISCVSSGITSVGDNGSGAIGSVG 354
G+ LRD GG G+ + ++E++ + S SG S +NG+GA G G
Sbjct: 156 GMEDLLRDGG--GGGGLEQELTEYFFSKSTFLSGEKSEVNNGNGATGGSG 203
>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 235 SLAGGS--GVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGG 369
S AGGS G G + + G T G G+G G+ G GGG
Sbjct: 414 SSAGGSSAGASGGGHKGAGGGSAAGGGTGSGSTGNGNAGNGGAGGGG 460
>SB_17081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 HSLAGGSGVRGMSEHWSAISCVSSGITSVG-DNGSGAIGSVGDHGGGYVTDQL 387
H AGGS V+ + E+++ + V G S G DN S +G V G T Q+
Sbjct: 74 HVSAGGSFVQEIPENYNGFAYVWRGAGSFGDDNISVEMGQVAFFGNEGSTVQI 126
>SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5)
Length = 404
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 244 GGSGVRGMSEHWSAISCVSS----GITSVGDNGSGAIGSVGDHGGGYVTDQLLGE 396
G G +GM E+ + ++ G G G G +G+HG G ++ +GE
Sbjct: 169 GLGGTKGMGEYGTGLAGTKGIGEHGTGLAGTKGMGGNKGIGEHGTGLGGNKGIGE 223
>SB_25456| Best HMM Match : Collagen (HMM E-Value=1.3e-09)
Length = 386
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 199 GGMGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSV 351
G G+ D + G G +G + +CV VG GSGA SV
Sbjct: 330 GDQGVQGVKGDQGVPGPQGPKGAQGVGNLSACVFQIAKGVGSTGSGASASV 380
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,264,115
Number of Sequences: 59808
Number of extensions: 107868
Number of successful extensions: 515
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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