Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B07
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    26   10.0 

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = +1

Query: 199 GGMGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGY 372
           GG G A         GG G  G   + SA S    G  + G  GSG   + G  GGGY
Sbjct: 198 GGGGYAVAPSGGGGCGGGGSSGGGGYASAPSG-GGGYATSGGGGSGGYATGGSSGGGY 254



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 20/60 (33%), Positives = 22/60 (36%)
 Frame = +1

Query: 199 GGMGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGYVT 378
           GG G A         GG G  G   +  A S    G    G +G G   S    GGGY T
Sbjct: 177 GGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSG-GGGCGGGGSSGGGGYASAPSGGGGYAT 235


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = +1

Query: 199 GGMGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGY 372
           GG G A         GG G  G   + SA S    G  + G  GSG   + G  GGGY
Sbjct: 198 GGGGYAVAPSGGGGCGGGGSSGGGGYASAPSG-GGGYATSGGGGSGGYATGGSSGGGY 254



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 20/60 (33%), Positives = 22/60 (36%)
 Frame = +1

Query: 199 GGMGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGYVT 378
           GG G A         GG G  G   +  A S    G    G +G G   S    GGGY T
Sbjct: 177 GGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSG-GGGCGGGGSSGGGGYASAPSGGGGYAT 235


>Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical
           protein C17G1.4b protein.
          Length = 844

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +1

Query: 223 LRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGYVT 378
           L +    G  G  G S  + + S  SSG    G  GSG  GS G    G  T
Sbjct: 252 LSNSQYPGNFGAPGSSSGFDSFSNGSSGYQGYGLPGSGTPGSQGHSTSGQNT 303


>Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical
           protein C17G1.4a protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +1

Query: 223 LRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGYVT 378
           L +    G  G  G S  + + S  SSG    G  GSG  GS G    G  T
Sbjct: 252 LSNSQYPGNFGAPGSSSGFDSFSNGSSGYQGYGLPGSGTPGSQGHSTSGQNT 303


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 247 GSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGG 369
           GSG+ G S  W   S  S+G  S G  G G  G  G  GGG
Sbjct: 29  GSGI-GSSGGWGG-SDASAG-ASAGGTGGGRGGGRGGSGGG 66


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 226 RDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGY 372
           R ++  GG G  G     +A+     G  +VG  G G  G  G HGGG+
Sbjct: 69  RGYAQYGGGGGYGGGHGGAAVGGGYGG--AVGGGGGGGYG--GGHGGGH 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,140,791
Number of Sequences: 27780
Number of extensions: 72285
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)