Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B07
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 32 0.19
At4g20850.1 68417.m03025 subtilase family protein contains simil... 31 0.25
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote... 31 0.25
At5g46730.1 68418.m05757 glycine-rich protein 30 0.58
At4g11300.1 68417.m01826 expressed protein 30 0.58
At3g13065.1 68416.m01632 leucine-rich repeat transmembrane prote... 30 0.77
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 28 2.3
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr... 28 2.3
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr... 28 2.3
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear... 27 5.4
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 27 5.4
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 27 7.1
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 27 7.1
At1g53620.1 68414.m06094 glycine-rich protein 27 7.1
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 27 7.1
At2g01420.2 68415.m00063 auxin transport protein, putative simil... 26 9.4
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont... 26 9.4
>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
helicase, putative nearly identical to HUA enhancer 2
[Arabidopsis thaliana] GI:16024936
Length = 995
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 307 ITSVGDNGSGAIGSVGDHGGGYVTDQLL 390
+ +V N S GS HGGGY+ D LL
Sbjct: 626 VVNVVKNSSVGTGSASSHGGGYIVDTLL 653
>At4g20850.1 68417.m03025 subtilase family protein contains
similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
(TPP-II) (Tripeptidyl aminopeptidase)
(Swiss-Prot:P29144) [Homo sapiens]
Length = 1380
Score = 31.5 bits (68), Expect = 0.25
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 211 LAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGG 369
L +RLR S + G+R +SA+ C SS + G G G G GGG
Sbjct: 44 LHRRLRRRSCSRSRGIRLRRSGFSAMPCSSSDTLTASRVGCGGGGGGGAVGGG 96
>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1007
Score = 31.5 bits (68), Expect = 0.25
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 274 HWSAISCVSSGITSVGDNGSGAIGS 348
+W ++C S G+TS+ NG G +GS
Sbjct: 46 NWYGVTCSSGGVTSIDLNGFGLLGS 70
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 30.3 bits (65), Expect = 0.58
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 247 GSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGY 372
G G G H A G G G GA G G HGGGY
Sbjct: 194 GGGAGGGGSHGGAGGYGGGG--GGGSGGGGAYGGGGAHGGGY 233
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +1
Query: 244 GGSGVRGMSEHWSAIS--CVSSGITSVGDNGSGAIGSVGDHGGG 369
GGS EH S G G GA G G HGGG
Sbjct: 131 GGSAYGAGGEHASGYGNGAGEGGGAGASGYGGGAYGGGGGHGGG 174
>At4g11300.1 68417.m01826 expressed protein
Length = 371
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 235 SLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAI 342
S GGSG R ++ WS+ S G + G G+G +
Sbjct: 171 SSGGGSGRRSSTDQWSSFGRRSGGSSGGGGGGAGCV 206
>At3g13065.1 68416.m01632 leucine-rich repeat transmembrane protein
kinase, putative leucine-rich repeat transmembrane
protein kinase 1 GB:AAC27894 from [Zea mays]
Length = 646
Score = 29.9 bits (64), Expect = 0.77
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 205 MGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVG 354
M +L+ S +GG + W I+C S +T + +G G GS+G
Sbjct: 1 MNSPSKLKGWSSSGGDPC---GDSWDGITCKGSSVTEIKVSGRGLSGSLG 47
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 171 GHGLDYAHGLDYGHG 127
GHG + HG YGHG
Sbjct: 134 GHGFGHGHGYGYGHG 148
>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 352
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 HWSAISCVSSGITSVGDNGSGAIGSV-GDHGGGYVTDQL 387
H+ A++ ++G+ V GS A+ V GDH G + TDQ+
Sbjct: 101 HFGAVT--TAGMLFVLGGGSDAVSPVTGDHDGTFATDQV 137
>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 345
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 274 HWSAISCVSSGITSVGDNGSGAIGSV-GDHGGGYVTDQL 387
H+ A++ ++G+ V GS A+ V GDH G + TDQ+
Sbjct: 94 HFGAVT--TAGMLFVLGGGSDAVSPVTGDHDGTFATDQV 130
>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
15}
Length = 118
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 244 GGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGG 366
GGSG G S SG + G +GSG GS G G
Sbjct: 6 GGSGSSGSGSGGSVSGGSGSGGSGSGGSGSGGSGSGGRANG 46
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 204 PAQIAPLLAYAGHGLDYAHGLDYGHGLDY 118
PA P L+ +G +HG +YGH Y
Sbjct: 454 PAFGGPPLSQVSYGYGQSHGPEYGHAAPY 482
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 193 DLGGMGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHG 363
D GG G ++ D GG G R S S G S G GSG+ G +G
Sbjct: 123 DRGGGGYSRGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYG 179
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 193 DLGGMGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHG 363
D GG G ++ D GG G R S S G S G GSG+ G +G
Sbjct: 123 DRGGGGYSRGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYG 179
>At1g53620.1 68414.m06094 glycine-rich protein
Length = 143
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 244 GGSGVRGMSEHWS-AISCVSSGITSVG-DNGSGAIGSVGDHGG 366
GG GV G S I CVSS +G D+G G G G GG
Sbjct: 97 GGCGVCGFVIFPSIVICCVSSYRKPIGGDDGGGCGGGEGGSGG 139
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 304 GITSVGDNGSGAIGSVGDHGGGYVTDQLLGE 396
G VGD G G +G VG G G V +G+
Sbjct: 192 GQVGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222
>At2g01420.2 68415.m00063 auxin transport protein, putative similar
to auxin transport protein PIN7[Arabidopsis thaliana]
gi|5817305|gb|AAD52697
Length = 616
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 217 QRLRDHSLAGGSGVRGMS--EHWSAISCVSSGITSVGDNGSGAIGSVGDHGGG 369
Q + ++ GG + G+ E I ++G+ +G N + + + G GGG
Sbjct: 391 QPRKSNARGGGDDIGGLDSGEGEREIEKATAGLNKMGSNSTAELEAAGGDGGG 443
>At1g67510.1 68414.m07690 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 719
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 274 HWSAISCVSSGITSVGDNGSGAIGSVGDHGGGYVTDQL 387
HWS ISC++ I+ + I G H GY+ +L
Sbjct: 57 HWSGISCMN--ISDSSTSRVVGISLAGKHLRGYIPSEL 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,074,391
Number of Sequences: 28952
Number of extensions: 76142
Number of successful extensions: 451
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -