Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B06
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 148 7e-35
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 126 2e-28
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 122 5e-27
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 103 2e-21
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 100 2e-20
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 92 8e-18
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 87 2e-16
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 87 3e-16
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 86 4e-16
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 77 2e-13
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 75 8e-13
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 75 1e-12
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 70 4e-11
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 66 5e-10
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 64 2e-09
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 56 7e-07
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 51 1e-05
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 49 6e-05
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 48 2e-04
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 46 5e-04
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 44 0.003
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 42 0.006
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 0.011
UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subuni... 38 0.11
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 38 0.14
UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=... 38 0.18
UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.74
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 34 1.7
UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 - M... 34 1.7
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 34 1.7
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 33 5.2
UniRef50_A7UG40 Cluster: Membrane protein; n=1; Fibrobacter succ... 32 6.9
UniRef50_Q6FMF3 Cluster: Candida glabrata strain CBS138 chromoso... 32 6.9
UniRef50_UPI00006CB1D5 Cluster: hypothetical protein TTHERM_0030... 32 9.2
UniRef50_Q6H5I5 Cluster: 1-phosphatidylinositol-3-phosphate 5-ki... 32 9.2
UniRef50_Q38FR6 Cluster: Mitotubule-associated protein Gb4, puta... 32 9.2
UniRef50_Q22SL8 Cluster: Leucine Rich Repeat family protein; n=1... 32 9.2
UniRef50_Q6FUT9 Cluster: Candida glabrata strain CBS138 chromoso... 32 9.2
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 148 bits (359), Expect = 7e-35
Identities = 67/109 (61%), Positives = 85/109 (77%)
Frame = -3
Query: 420 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 240 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLXQ 94
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL Q
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQ 112
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 126 bits (305), Expect = 2e-28
Identities = 62/110 (56%), Positives = 73/110 (66%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
MS+ L WMI RNNNA+L+KKR+IKKPFS EP N+ N+ SFRYNGL+ K V V D K
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 243 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLXQ 94
GF V K+AK KP K+ I AG RRSLYK++R L YR DL Q
Sbjct: 61 GFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQ 110
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 122 bits (294), Expect = 5e-27
Identities = 54/110 (49%), Positives = 77/110 (70%)
Frame = -3
Query: 429 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPD 250
+ SS LNW+I+R++NAFL+K+R+I+KPFS EP N+TNL SFRY+GL+H K + + +
Sbjct: 1 IMASSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTI-TITPAE 59
Query: 249 RKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
+KG VY + K KPAK ++ K G RR+L K+ ++KAN YR DL
Sbjct: 60 KKGVNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADL 109
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 103 bits (247), Expect = 2e-21
Identities = 48/108 (44%), Positives = 69/108 (63%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 243 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
G VV K+ RKPA + +R AR +L ++ +++ N YR DL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDL 106
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 100 bits (240), Expect = 2e-20
Identities = 49/108 (45%), Positives = 68/108 (62%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
MSS L W IIRNN+ FLV+ + K +KEPNNVT L++F+YNGL++KK VGV P K
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 243 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
G + +K KA KP K + + +RR+L ++ + N+YR DL
Sbjct: 59 GVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDL 106
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 91.9 bits (218), Expect = 8e-18
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKP---FSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 253
MS+ L W +I+N+++FL++++ + F+ EPNNV N +SF++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 252 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLXQ 94
D KG K++K KPAK +R RR+ +K+ L+ YR DL +
Sbjct: 61 DNKGVLFKTKRSKVVSKPAKMFVRATLSKDRRRAFKSIKKNLECTEYRPDLAE 113
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 87.0 bits (206), Expect = 2e-16
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
+S + WM++RN ++FLVKKRNIKK FS +P N +++ R+ G I K+A+ V + K
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGK 61
Query: 243 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA-NHYRTDL 100
G T VY K KPAK L R G RR++ ++ +K +YR DL
Sbjct: 62 GVTFVYLAHKGATKPAKRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDL 110
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 86.6 bits (205), Expect = 3e-16
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = -3
Query: 420 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
S L W+++RNN++F+VK++ I + FS+EP N+ LHS++Y+GL++ KAVG+ KG
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKG 62
Query: 240 FTVVYKKAKATRKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLXQ 94
+ K AK + K + K G RR+ V ++ YR DL +
Sbjct: 63 VVITTKNAKQSSSAIKKTVNVATLKKGGGRRTAGAVSNVVAKKGYRADLTR 113
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 86.2 bits (204), Expect = 4e-16
Identities = 45/108 (41%), Positives = 63/108 (58%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
MSS L W +I+NN+ FL+K+ + FS++P N+ N + FRY G +HKKA+G+ E K
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGK 58
Query: 243 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
G V K KPAK + R F G RR+L K++ L YR +L
Sbjct: 59 GVVVTTKNVAKDHKPAKAVTRTKFVRGRRRTLQKIRNLTCKQKYRREL 106
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 77.4 bits (182), Expect = 2e-13
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = -3
Query: 399 IIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKK 220
+IRNN+AFL ++R I+K FS+EP N+ ++S YNGL + KAVGV D K V KK
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 219 AKATRKPAKNLIRRPFKAGARRSLYK-VKRLLKANHYR 109
PA+++I+ K G R + K V+ L+K + R
Sbjct: 62 TGKKNLPAQSVIKTTIKRGGARGIVKSVQGLVKGRNAR 99
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 75.4 bits (177), Expect = 8e-13
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 247
+SS L W + RN NAFLVK+ + FS++P N+ N HSF+Y G + KA+G V+ +
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIG-VQPTEN 66
Query: 246 KGFTVVYKKAKATRKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLXQ 94
G V+ KK+ ++P KN +R F KA R+ V N YR DL +
Sbjct: 67 GGVVVLTKKSGNAQQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLRE 119
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 74.5 bits (175), Expect = 1e-12
Identities = 47/113 (41%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 247
+SS L W I RN NAFLVK+R FS++P N+ N SF+Y G + KAVG V+ +
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVG-VQATEN 66
Query: 246 KGFTVVYKKAKATRKPAKNLIRRPF-KAGARRSLYK-VKRLLKANHYRTDLXQ 94
G V+ KK ++PAKNL+ + A R +YK V N YR DL +
Sbjct: 67 GGVVVITKKPGNPQQPAKNLVSVSWGPNAATRKIYKAVASKTAKNGYRADLRE 119
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 69.7 bits (163), Expect = 4e-11
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = -3
Query: 411 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
L W I++NNN FLVK + N K FSKE NN+TN+HS++++GL +KK V + +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 240 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
+ K K KP ++ + K R V + N+YR DL
Sbjct: 68 VVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDL 114
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 66.1 bits (154), Expect = 5e-10
Identities = 38/107 (35%), Positives = 61/107 (57%)
Frame = -3
Query: 420 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
S +L W++ +N ++FLVK+ F++E N+ N + +Y+GL KAV + + D+K
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVDISIS-DKK- 58
Query: 240 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
T+ K KAT+KPAK P + GAR ++ + N+YR DL
Sbjct: 59 VTLTTKIEKATKKPAKAQNAVPLRKGARGGANTIRANISRNYYRRDL 105
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 63.7 bits (148), Expect = 2e-09
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = -3
Query: 429 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 253
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 252 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDL 100
R + K +KPAK L R+ A A R YK + + YR DL
Sbjct: 61 PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDL 112
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 55.6 bits (128), Expect = 7e-07
Identities = 33/77 (42%), Positives = 46/77 (59%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 243 GFTVVYKKAKATRKPAK 193
G V K K +PAK
Sbjct: 59 GVVVSTKNEKG--RPAK 73
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 51.2 bits (117), Expect = 1e-05
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
+S+ W ++ NA+LVK++ I S++P + NL + +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGVHYCKPSG 107
Query: 243 GFTVVYKKAKATRKPAKN 190
V+ K K KPAK+
Sbjct: 108 KICVITKVVKNANKPAKS 125
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 49.2 bits (112), Expect = 6e-05
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
MSS L W+++RN N+F VK + FS+E N+ N + +Y+GL + K V + +P
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI--HPSAA 57
Query: 243 GFTVVYKKAKATRKP-----AKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
G + K KA KP A++ + G RR+ YR DL
Sbjct: 58 G-GITITKIKADAKPNQVASARSHVTLKRSTGPRRANKIAAAETAGKGYRADL 109
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 47.6 bits (108), Expect = 2e-04
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = -3
Query: 420 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
S+ L W ++ N +F+ K+N F+ EP N+ NL++ +Y+GL ++++ + P+ G
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNG 60
Query: 240 FTVVYKKAKATRK-PAKNLIRRPFK 169
V K AK T+K + IR P K
Sbjct: 61 KLV--KNAKITKKNTGSSTIRCPKK 83
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVV 262
MS + W +++ NNAFLVK+ + S +P N T + ++ G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 265
MS L W II+ NNAFL + S EP N+ N +S +Y+GL + + V
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGL--TLSAEPGNLRNKNSLKYSGLARRTTIDV 51
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 42.3 bits (95), Expect = 0.006
Identities = 28/91 (30%), Positives = 42/91 (46%)
Frame = -3
Query: 420 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
S+ L W+++R N+ FL K+ I+ S +P N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFNNNANWTKRHAGFLNTKAAVVKTKGDR-- 59
Query: 240 FTVVYKKAKATRKPAKNLIRRPFKAGARRSL 148
V K KA KP + AG S+
Sbjct: 60 ILVTTKDGKAGNKPKSMYKKAVMDAGVEASV 90
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.5 bits (93), Expect = 0.011
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -3
Query: 423 MSSSLNWMIIRNNNAFLVKKR-NIKKPFSKEPNNVTNLHSFR 301
+SS L W + RN NA+LVK+ + FS++P NV N HSF+
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
>UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subunit;
n=2; Bacillus|Rep: Type III restriction enzyme, res
subunit - Bacillus coagulans 36D1
Length = 1068
Score = 38.3 bits (85), Expect = 0.11
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = -3
Query: 378 FLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP 199
F++ NIK+ + + V +H R GLI + + + E RKG +++ K T +
Sbjct: 47 FVLAAENIKEAYGT--SQVDRIHMLRREGLIEPELMDIFETLRRKGNQAMHEALKFTTEE 104
Query: 198 AKNLIRRPFK 169
AK L+R F+
Sbjct: 105 AKALLRLAFR 114
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 37.9 bits (84), Expect = 0.14
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 429 VKMSSSLNWMIIRNNNAFL-VKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 253
V S W + + +NAF FS EP NVT SFR +GL + K + + E+
Sbjct: 5 VPASDDFLWQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREHD 64
Query: 252 DRKG 241
KG
Sbjct: 65 GGKG 68
>UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=2;
Theileria|Rep: 60S ribosomal protein l28, putative -
Theileria annulata
Length = 150
Score = 37.5 bits (83), Expect = 0.18
Identities = 24/96 (25%), Positives = 49/96 (51%)
Frame = -3
Query: 411 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 232
L W ++RNN+AFL K R FS E +N+ + HS R+ ++ + + V ++ + V
Sbjct: 20 LLWELVRNNHAFLKKSRT--TTFSLESHNLLSKHSPRFT-VLTQFCITFVGYTNKTSYDV 76
Query: 231 VYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLK 124
V + ++ +R + ++ S+ +K+ L+
Sbjct: 77 VLNSTGSLITLKRSNVRNSRRPSSKTSVKSLKKSLE 112
>UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 146
Score = 35.5 bits (78), Expect = 0.74
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = -3
Query: 411 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 232
L W +I+ NNA++ K + + F+KE N+ H+ Y+GL+ + + +P +
Sbjct: 27 LVWELIKKNNAYIFKSGH--ETFTKERYNLMARHTPMYSGLMQNSVMNLELSPSGSKIVL 84
Query: 231 VYKKAKATRKP-----AKNLIRRP 175
+ R+P KNL + P
Sbjct: 85 TSMDLQNARQPRNKTQTKNLDKNP 108
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 34.3 bits (75), Expect = 1.7
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 417 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVT 319
S L W I++NNNAFLVK + F+ +P +VT
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVT 32
>UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 -
Mycoplasma fermentans
Length = 228
Score = 34.3 bits (75), Expect = 1.7
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Frame = -3
Query: 405 WMIIRNNNAFLVKKRNIKKPFSKEP--NNVTNLHSFRYNGLIHKK--AVGVVENPDRKGF 238
WM + N + L+K+ N+K P ++ N+ +F++NG ++++ V V+ N +
Sbjct: 10 WMSLVNKDNLLIKEENLKPKKIVFPLIGSIINVQAFKFNGELYRQWNGVKVLRNTPQHYV 69
Query: 237 TVVYKKAKATRKPAKNLIRRPFKAG--ARRSLYKVKRLLK 124
+Y K K K + R + + S+Y LLK
Sbjct: 70 LFMY-KTKVAETDKKGWVYREYVLWFMPKNSMYNALILLK 108
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 34.3 bits (75), Expect = 1.7
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 426 KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNN-VTN-LHSFRYNGLIHKKAVGVVENP 253
K S LNW + N + K+NIK K+ NN +TN L F +N I+K+ + ++E
Sbjct: 36 KKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLEIN 95
Query: 252 DRKGFTVVYKKAKATRKPAKNL 187
K K + RK K +
Sbjct: 96 KIKEKKKETKNKQIKRKEIKQI 117
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.7 bits (71), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 411 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 247
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
>UniRef50_A7UG40 Cluster: Membrane protein; n=1; Fibrobacter
succinogenes subsp. succinogenes S85|Rep: Membrane
protein - Fibrobacter succinogenes subsp. succinogenes
S85
Length = 284
Score = 32.3 bits (70), Expect = 6.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 481 LRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQ 341
+ TH E FG + R+ ++ +++H QQ C E Q+ KA Q
Sbjct: 100 INTHHEKTCFGNQTDNCREGNLLEVVEEHKQQYCASLERDQFSKAKQ 146
>UniRef50_Q6FMF3 Cluster: Candida glabrata strain CBS138 chromosome
K complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome K complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 1489
Score = 32.3 bits (70), Expect = 6.9
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 213 ATRKPAKNLIRRPFK-AGARRSLYKVKRLLKANHYRTDLXQGYPSSCFSHPPLPE 52
A++K KNL +R + + ++RSLY + K + D G PS+ PPLP+
Sbjct: 648 ASKKSLKNLQKRTLQNSESKRSLYSQTSISKRSLNLNDYLIGGPSNSAELPPLPK 702
>UniRef50_UPI00006CB1D5 Cluster: hypothetical protein
TTHERM_00300660; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00300660 - Tetrahymena
thermophila SB210
Length = 1262
Score = 31.9 bits (69), Expect = 9.2
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -3
Query: 363 RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRK-PAKNL 187
+NI+KP K+ N +TN ++ + + + K ++ N D FT + + RK K +
Sbjct: 465 KNIEKPIQKQINQITNNYTHQNSMIFSKHSLQQENNNDELNFTQLSQLKGGERKNKMKEI 524
Query: 186 IRRPFKAGARRSL 148
I+ ++R +
Sbjct: 525 IKGTIFINSQRQI 537
>UniRef50_Q6H5I5 Cluster: 1-phosphatidylinositol-3-phosphate
5-kinase FAB1-like protein; n=3; Oryza sativa|Rep:
1-phosphatidylinositol-3-phosphate 5-kinase FAB1-like
protein - Oryza sativa subsp. japonica (Rice)
Length = 1560
Score = 31.9 bits (69), Expect = 9.2
Identities = 22/91 (24%), Positives = 39/91 (42%)
Frame = -2
Query: 505 ADGSHPFCLRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 326
ADG CL + + L+ +N++++ H + Q I CE++ + G
Sbjct: 706 ADGKD--CLEAISDGISTETRTSLDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFD 762
Query: 325 CD*PPLLQVQRLDSQESCWCRGEP*QEGIHS 233
LQ L+ + SC GEP + ++S
Sbjct: 763 TSLGRYLQDSLLNEKHSCLSCGEPPEAHMYS 793
>UniRef50_Q38FR6 Cluster: Mitotubule-associated protein Gb4,
putative; n=2; Trypanosoma brucei|Rep:
Mitotubule-associated protein Gb4, putative -
Trypanosoma brucei
Length = 8214
Score = 31.9 bits (69), Expect = 9.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 511 RPADGSHPFCLRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCE-EAQYQKAVQQ 338
R AD H FC+ T G +G+ + NV+VT + +Q C+ + E Q+ ++ Q
Sbjct: 455 RQADIEHTFCVET-------GTAVGVPKSNVIVTHSSYNEEQNCLIIQAELQHDNSMTQ 506
>UniRef50_Q22SL8 Cluster: Leucine Rich Repeat family protein; n=1;
Tetrahymena thermophila SB210|Rep: Leucine Rich Repeat
family protein - Tetrahymena thermophila SB210
Length = 4293
Score = 31.9 bits (69), Expect = 9.2
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -3
Query: 408 NWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 232
N + + N N L+ +N++K ++ NN+ + + NG ++GV NP +
Sbjct: 3326 NPITLNNQNIALLDNQNLEKMSLQQQSNNIVSQTTL-LNGSFSNNSIGVNNNPFSQQERF 3384
Query: 231 VYKKAKATRKPAKNLIRRP 175
+K K T +NL + P
Sbjct: 3385 YFKGVKHTFAQYENLAKLP 3403
>UniRef50_Q6FUT9 Cluster: Candida glabrata strain CBS138 chromosome
F complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome F complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 310
Score = 31.9 bits (69), Expect = 9.2
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = -3
Query: 429 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPD 250
+ +S L W II + K + + F ++P NVT L + + L + K V E D
Sbjct: 1 MNVSDDLIWDIINHGFCATKIKTKVGQTFDRDPYNVTGLFTRQSCPLANSKYATVREYGD 60
Query: 249 RKGFTVVYKKAKATRKPAK 193
+ + K + PAK
Sbjct: 61 KGRLYLCIKTPERAHTPAK 79
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,016,495
Number of Sequences: 1657284
Number of extensions: 9846257
Number of successful extensions: 25541
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 24736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25514
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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