Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B06
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     71   7e-13
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     70   1e-12
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     69   2e-12
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    32   0.32 
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   2.3  
09_02_0336 - 7397745-7398308,7398813-7400723                           29   3.0  
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594...    29   3.0  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    27   6.9  
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106...    27   6.9  
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    27   9.1  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
 Frame = -3

Query: 414 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 244
           SL W +++ NN+FLVK+    N K  FSKEPNN+ N+HS++++GL +KK V  V+    K
Sbjct: 7   SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGK 65

Query: 243 GFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
              VV    K  +  KPA    +   +   R+    VK  +  N+YR DL
Sbjct: 66  ETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDL 115


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
 Frame = -3

Query: 411 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +  +  +  
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67

Query: 240 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
             V+   K K    PAK   +   +   R+    VK  +  N+YR DL
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDL 115


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
 Frame = -3

Query: 411 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +  +  +  
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67

Query: 240 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
             V+   K K    PAK   +   +   R+    VK  +  N+YR DL
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDL 115


>09_02_0203 -
           5746068-5746307,5746469-5746729,5746833-5748239,
           5748588-5748714,5748800-5749119,5749202-5749963,
           5750749-5750898,5751007-5751096,5751196-5751340,
           5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = -2

Query: 505 ADGSHPFCLRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 326
           ADG    CL    + +       L+ +N++++    H + Q I CE++   +    G   
Sbjct: 670 ADGKD--CLEAISDGISTETRTSLDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFD 726

Query: 325 CD*PPLLQVQRLDSQESCWCRGEP*QEGIHS 233
                 LQ   L+ + SC   GEP +  ++S
Sbjct: 727 TSLGRYLQDSLLNEKHSCLSCGEPPEAHMYS 757


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 432 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 301
           T++ SS+L WM+I + N  L +  +    FSK P   T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621


>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -2

Query: 427 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 326
           KN ++  L+    +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217


>03_05_0394 +
           23758392-23758625,23759097-23759273,23759349-23759453,
           23759640-23759681,23759763-23759960,23760037-23760165,
           23760248-23760377,23761119-23761179,23761241-23761322,
           23761402-23761653
          Length = 469

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 313 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 423
           +VSHI+ +  E+  D+AL + EC +  + H  Q   H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 390  NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
            N  A +  K   KKP  ++P         +Y GL+ KK+     N +  G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523


>08_01_0133 +
           1062365-1063057,1063210-1063318,1063914-1064005,
           1064399-1064560,1064718-1064834,1065029-1065127
          Length = 423

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 424 FYGLNLFLHQTQRAHNVCVDKKDAN 498
           F  +NLF+H+TQ +  V VD KD++
Sbjct: 281 FAEINLFVHRTQFSIKVMVDIKDSD 305


>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +1

Query: 178 TAD*VFSGLSGSLCFLVHYCESLP-VRVLHDTNSFLVNQAVVPEGVEVSHIVRL---LAE 345
           TA+ V     G    LV  C+  P V  LHD + F+ +Q ++     V+H++++      
Sbjct: 107 TAEVVIRHFDGCKADLV-VCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVA 165

Query: 346 RLF---DIALLHKECIV 387
           ++F   D +LL+ +C +
Sbjct: 166 KIFRGKDTSLLYCQCFM 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,803
Number of Sequences: 37544
Number of extensions: 273353
Number of successful extensions: 678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)