Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B06
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2) 42 4e-04
SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022) 40 0.001
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0) 28 4.1
SB_650| Best HMM Match : rve (HMM E-Value=0.00048) 28 4.1
SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07) 27 7.1
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09) 27 7.1
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 27 9.4
SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5) 27 9.4
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
Length = 132
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = -2
Query: 478 RTHCEHVVFGVEIGLN-RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQ 302
R +C +F E + R NV D +P+ C PCE + Y+ +Q+G EQ PP+L+
Sbjct: 38 RKYCNKGLFKGEFQEHWRVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILR 92
Query: 301 VQRLDSQESCWCRGEP 254
++E C+C +P
Sbjct: 93 SWTPHTEEGCFCEAKP 108
>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
Length = 90
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -3
Query: 273 VGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
VGV P KG + +K KA KP K + + +RR+L ++ + N+YR DL
Sbjct: 2 VGVDAAPSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDL 59
>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 219
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 9 RLGCGCLSLFCFNGPLG 59
R+GC CL L C++GP G
Sbjct: 94 RMGCRCLELDCWDGPDG 110
>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
Length = 363
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 460 VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 341
V G+E N +N+ +T + P Q +PC +A Y+ VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280
>SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 426 LRFKPISTPNTTCSQCVRRQKGC 494
+R+ P S P QCV R KGC
Sbjct: 566 MRYAPQSIPQNPSFQCVIRNKGC 588
>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
Length = 653
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 475 THCEHVVFGVEIGLNRKNVVVTELDDHPQQQCI 377
+HC+H++ G E G+ N + + D +QC+
Sbjct: 261 SHCKHILIGAEEGIYSLN-ISDHVHDMEMEQCL 292
>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
Length = 720
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 211 YQKAR*KLNPPSIQGWCQEVTV 146
YQK LNP S GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -3
Query: 369 KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKN 190
+K ++KK N + +R N ++KK E+P + ++YK + TRKP +
Sbjct: 10 EKFDMKKNEPAPIANKYKAYLYRTNKQMNKKQ----EHPVTQRKQMIYKPGRMTRKPGRL 65
Query: 189 LIRRPFKAGARRS 151
+ RR + + S
Sbjct: 66 VTRRTSRVTLKTS 78
>SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)
Length = 255
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 399 IIRNNNAFLVKKRNIKKPFSKEPNNVT-NLHSFRYNGLIHKKAVGVVENPDRKGFT 235
++ + + FL K PF+ + +V LH +G ++ AV VE R+GFT
Sbjct: 9 LVSSPSDFLCKTIPFSTPFATDSVHVQITLHMDEQSGPTYEAAVNWVEQVCREGFT 64
>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 283 VNQAVVPEGVEVSHIVRLLAERL--FDIALLHKECIVVADDHPV 408
VN+ V ++ +++L RL D++L++K CI A DH V
Sbjct: 138 VNEVVKKSSKKLYFLIQLKRARLPPSDLSLIYKACIRSAVDHAV 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,373
Number of Sequences: 59808
Number of extensions: 324290
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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