Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B06
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A) 70 1e-12
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn... 64 5e-11
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ... 29 2.5
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ... 29 2.5
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 28 4.4
At3g08870.1 68416.m01031 lectin protein kinase, putative similar... 27 7.7
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF... 27 7.7
>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
Length = 143
Score = 69.7 bits (163), Expect = 1e-12
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = -3
Query: 411 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
L W I++NNN FLVK + N K FSKE NN+TN+HS++++GL +KK V + +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 240 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
+ K K KP ++ + K R V + N+YR DL
Sbjct: 68 VVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDL 114
>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
protein chromosome II BAC F6F22 - Arabidopsis
thaliana,PID:g3687251
Length = 143
Score = 64.1 bits (149), Expect = 5e-11
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = -3
Query: 411 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 241
L W I++ NN FLVK + N K FSKE NN+ N++S++++GL +KK V + +G
Sbjct: 8 LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67
Query: 240 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 100
+ K K KP ++ + K R V + N+YR DL
Sbjct: 68 VVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDL 114
>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 600
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = -3
Query: 264 VENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAG--------ARRSLYKVKRLLKANHYR 109
+ NP +G+TV++ A RK K +I K R +L VKRL KA+ Y+
Sbjct: 323 LRNP--RGYTVLH--VAAMRKEPKLIISLLMKGANILDTTLDGRTALVIVKRLTKADDYK 378
Query: 108 TDLXQGYPS 82
T G PS
Sbjct: 379 TSTEDGTPS 387
>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
(SCL13)
Length = 287
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 364 AQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRG 260
+QY +Q+ A+ PPLL+V +D +S + RG
Sbjct: 91 SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = -3
Query: 369 KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKN 190
K+ + ++ KEP+ T R N KKA V E RK KK + +KP +
Sbjct: 770 KQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKPKHD 829
Query: 189 LIRRPFKAGARRSLYKVKRLLKANHYRTD 103
P + K KR K+ T+
Sbjct: 830 EEEVPNETEKPEKKKKKKREGKSKKKETE 858
>At3g08870.1 68416.m01031 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 693
Score = 27.1 bits (57), Expect = 7.7
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = -3
Query: 378 FLVKKRNIKKPFSKEPNNVTNLHSFRYNGL-IHKKAVGVVENPDRKGFTVVYKKAKATRK 202
F++ KR I++ + E + H FRY L + K E GF +VY+ ++
Sbjct: 332 FVMYKRRIQEEDTLEDWEIDYPHRFRYRDLYLATKKFKESEIIGTGGFGIVYRGNLSSSG 391
Query: 201 P-AKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLXQGY 88
P A I G R + +++ L + H QG+
Sbjct: 392 PIAVKKITSNSLQGVREFMAEIESLGRLGHKNLVNLQGW 430
>At1g35830.1 68414.m04452 VQ motif-containing protein contains
PF05678: VQ motif
Length = 302
Score = 27.1 bits (57), Expect = 7.7
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = -3
Query: 339 KEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGA 160
+ P V + + ++ ++ GV +P F+ ++ R P+ L PF+
Sbjct: 108 RAPTTVLTTDTSNFRAMV-QEFTGVPASPFSHPFSSTTRRFDIFRSPSDPLTYNPFRPIP 166
Query: 159 RRSLY-KVKRLLKANHYRTDLXQGYPSSCFSHPPLPEAH 46
++ L LL +H+ T S F PLP+ H
Sbjct: 167 QKPLNPSTSSLLNLHHHTT------TSMTFPDLPLPQTH 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,063,274
Number of Sequences: 28952
Number of extensions: 216147
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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