Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B05
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0120 + 16242220-16242483,16242538-16243424,16244604-162452... 32 0.53
11_04_0162 + 14291835-14292281,14292330-14292697,14292836-142930... 29 2.8
12_01_0543 - 4271380-4272218,4272258-4272873 29 3.7
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985... 29 3.7
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 29 3.7
10_08_0119 - 14952786-14953931,14954709-14954831 29 3.7
05_03_0214 + 10345898-10346728 29 4.9
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440... 29 4.9
10_08_0124 + 14992399-14993478 28 6.5
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193... 28 6.5
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 28 6.5
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 28 6.5
12_01_1035 + 10656345-10656347,10656694-10656864,10656922-106577... 28 8.6
>01_04_0120 +
16242220-16242483,16242538-16243424,16244604-16245264,
16245582-16245943,16246071-16246140,16246666-16246740
Length = 772
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +2
Query: 152 INKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNIHSTSFRS*KYEFEISIA 316
++KL E+ K C T C++R LC+L A ++V P TS S + +S
Sbjct: 334 LHKLPEKKKDPGCPTITCSIRAQQFDQALCDLGASISVMPKLTSLTSSTS-RIRRRLSRL 392
Query: 317 FEGSTLP 337
F+GS P
Sbjct: 393 FKGSGSP 399
>11_04_0162 +
14291835-14292281,14292330-14292697,14292836-14293050,
14293090-14294129
Length = 689
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 152 INKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNI 265
++KL E+ K C T C++R LC+L A ++V P ++
Sbjct: 449 LHKLPEKKKYPGCPTITCSIRAQQFDQALCDLGASVSVMPKDV 491
>12_01_0543 - 4271380-4272218,4272258-4272873
Length = 484
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 152 INKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNI 265
++KL E+ K L C T C++ LC+L A ++V P +I
Sbjct: 311 LHKLPEKKKDLGCPTITCSIAAQQFDQALCDLGASVSVMPKDI 353
>11_03_0093 -
9852075-9852871,9852911-9853009,9853208-9853646,
9853803-9854129
Length = 553
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +2
Query: 143 DWYINKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNI 265
D ++KL E+ K C T C++R LC+L A ++V P ++
Sbjct: 391 DVILHKLPEKKKDPRCPTITCSIRAHQFDRALCDLGASVSVMPKDV 436
>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
Length = 783
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 575 HANCLLSSVVSTVLEISRQTLTSPNYKNEFF 667
HAN L+S TVL+++R+ T+PN K F
Sbjct: 641 HAN-FLASTHGTVLKLNREATTTPNPKRTLF 670
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 107 NYFGLS*NIIIYDWYINKLE-EQSKLLNCKTFRCAVRGILCELLAQLTVWPSNIH 268
N+ S N + ++ +I + + ++S+ LN F AVR ++ E TV PSN+H
Sbjct: 182 NFSVASSNALGFENFIRRDDLQRSEYLNDDCFAIAVRLVITEESPSFTVPPSNMH 236
>05_03_0214 + 10345898-10346728
Length = 276
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 152 INKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNI 265
++KL+E+ K C T C++ LC+L A ++V P N+
Sbjct: 37 LHKLQEKKKDPGCPTITCSIGAQQFVHALCDLGASVSVMPKNV 79
>02_03_0034 -
14142518-14142923,14142935-14143269,14143976-14144068,
14144704-14145674,14145714-14145812,14146011-14146488,
14146717-14146929
Length = 864
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 152 INKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNI 265
++KL E+ K L C T C++ LC+L A ++V P ++
Sbjct: 369 LHKLPEKKKDLGCPTITCSIGAQQFDQALCDLGASISVMPKDV 411
>10_08_0124 + 14992399-14993478
Length = 359
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 167 EQSKLLNCKTFRCAVRGILCELLAQLTVWPSNIH 268
++S+ LN F AVR ++ E + TV PSN+H
Sbjct: 141 QRSEYLNDDCFAIAVRLVITEEPSSFTVPPSNMH 174
>03_05_0013 -
19718178-19718930,19718997-19719205,19719245-19719325,
19719581-19720613
Length = 691
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 152 INKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNI 265
++KL E+ K C T C++ +LC+L A ++V P N+
Sbjct: 454 LHKLLEKKKDPGCPTITCSIGAQQFDQVLCDLGASVSVMPKNV 496
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 588 CYPLWYQQYWRLVVRPLQVQTTKMNFSEIYFIQNY 692
CYP Y L+ P+ V +T+ +FS++ ++NY
Sbjct: 838 CYPNVLVAYRILLTVPVTVASTERSFSKLKLLKNY 872
>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Frame = +2
Query: 557 CQRKDLHANC----LLSSVVSTVLEISRQTL-TSPNYKNE 661
C + + +NC L SS V +VL+I L TSPNYKN+
Sbjct: 991 CLQTFVGSNCSKGNLESSYVKSVLDIYELVLQTSPNYKND 1030
>12_01_1035 +
10656345-10656347,10656694-10656864,10656922-10657728,
10657881-10659092
Length = 730
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +2
Query: 155 NKLEEQSKLLNCKTFRCAVRG-----ILCELLAQLTVWPSNI 265
+KL E+ K L C T C++ LC+L A ++V P ++
Sbjct: 491 HKLSEKKKDLGCPTITCSIGAQQFDQALCDLGASVSVMPKDV 532
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,501,904
Number of Sequences: 37544
Number of extensions: 414916
Number of successful extensions: 759
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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