Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B05
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 455 FTMFPLKIVLSVVLANYGV 399
           + M  LKIVLS +L N+ V
Sbjct: 493 YAMLKLKIVLSTILRNFRV 511


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 345 LRSGKVEPSKAIEISN 298
           L  GK++P+K + ISN
Sbjct: 254 LEDGKLKPNKKVRISN 269


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 474 LWFLIPHLIHGGKKAGPD 527
           +WFL   ++HG     PD
Sbjct: 11  VWFLSALVVHGAVAGNPD 28


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 474 LWFLIPHLIHGGKKAGPD 527
           +WFL   ++HG     PD
Sbjct: 11  VWFLSALVVHGAVAGNPD 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,368
Number of Sequences: 438
Number of extensions: 5136
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)