Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B05
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR...    29   4.1  
At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR...    29   4.1  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   7.2  

>At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 204  VLCAGYYANCLPN*LYGLLIFILLH---FVPRNMSSKSQLLLKVPPYLNVTASW 356
            VL  G   NC  N   G  + I LH   +    +  K+ ++L+ PP LN   SW
Sbjct: 960  VLPGGKVPNCFMNQACGSSVSIPLHESYYSEEFLGFKACIVLETPPDLNFKQSW 1013


>At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1229

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 204  VLCAGYYANCLPN*LYGLLIFILLH---FVPRNMSSKSQLLLKVPPYLNVTASW 356
            VL  G   NC  N   G  + I LH   +    +  K+ ++L+ PP LN   SW
Sbjct: 1024 VLPGGKVPNCFMNQACGSSVSIPLHESYYSEEFLGFKACIVLETPPDLNFKQSW 1077


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 543 PNFTFSRALPSYLHVSGGVLETTVDGFRFFYNVST*NSSECCAGELWRLVE 391
           P   F + LPS   ++  V  T+ DG ++F+N  T  S+     EL  L E
Sbjct: 192 PKAAFLKPLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFE 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,845
Number of Sequences: 28952
Number of extensions: 335758
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)