Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B04
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 226 1e-59
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 226 1e-59
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 226 1e-59
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 226 1e-59
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 226 1e-59
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 226 1e-59
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 226 1e-59
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 226 1e-59
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 226 1e-59
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 220 7e-58
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 217 5e-57
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 119 1e-27
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 107 6e-24
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 90 1e-18
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 81 4e-16
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 77 1e-14
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 55 4e-08
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 48 7e-06
U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol ... 31 0.47
U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol ... 31 0.47
U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol ... 31 0.47
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 5.8
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 28 5.8
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 5.8
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 28 5.8
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 328
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 328
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 328
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 328
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 328
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 328
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 225 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 284
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 285 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 255 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 314
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 315 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 226 bits (552), Expect = 1e-59
Identities = 104/108 (96%), Positives = 107/108 (99%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 328
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 220 bits (537), Expect = 7e-58
Identities = 103/108 (95%), Positives = 106/108 (98%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP TMKI
Sbjct: 269 GMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-TMKI 327
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 328 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 217 bits (530), Expect = 5e-57
Identities = 101/108 (93%), Positives = 103/108 (95%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
GME GIHETTY SIMKCDVDIRKDLYANTVLSGGT+M+PGIADRMQKEI LAPSTMKI
Sbjct: 268 GMEGAGIHETTYQSIMKCDVDIRKDLYANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKI 327
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 328 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 119 bits (287), Expect = 1e-27
Identities = 54/108 (50%), Positives = 75/108 (69%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
G E G+ SIMKCDVD+R+ LY+N VLSGGTT++ G DR+ E+ +AP+ KI
Sbjct: 267 GTEWPGMAHVVNQSIMKCDVDLRQTLYSNIVLSGGTTLFKGFGDRLLGEMRKIAPADGKI 326
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 268
+I A ER WIGGSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 327 RISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 107 bits (257), Expect = 6e-24
Identities = 47/92 (51%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = -1
Query: 537 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIG 367
D+DIR L++N ++GG ++ G +R+ + P T+K+++ A P ERKY WIG
Sbjct: 344 DIDIRPTLFSNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIG 403
Query: 366 GSILASLSTFQQMWISKQEYDESGPSIVHRKC 271
GSIL SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 404 GSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 89.8 bits (213), Expect = 1e-18
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 13/111 (11%)
Frame = -1
Query: 588 MEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-------- 433
+E G+ E + I D+D R D Y + VLSGGTTMYPG+ R++KE+ L
Sbjct: 273 VEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHG 332
Query: 432 ---APSTMKIKIIAPPERKYSVWIGGSILASL--STFQQMWISKQEYDESG 295
A KI+I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 333 NTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 81.4 bits (192), Expect = 4e-16
Identities = 32/94 (34%), Positives = 63/94 (67%)
Frame = -1
Query: 591 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 412
G++ G+H+ + +I++C +D R+ LY N L+GG ++ PGIA+++++E++ + P+T+
Sbjct: 446 GLDTKGLHQLIHEAILQCPIDSRRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHT 505
Query: 411 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 310
++ P R + ++G I+AS STF+ IS Q+
Sbjct: 506 QVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 16/112 (14%)
Frame = -1
Query: 573 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA------------ 430
I +T I +C +D+R+ LY N VLSGG+TM+ A ++Q+++ L+
Sbjct: 303 ISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSG 362
Query: 429 ----PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 286
P + +++I+ ++Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 363 GRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = -1
Query: 588 MEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIK 409
++ CG+ E SI +C +R L N ++ GG++ +PG +R+++E+ ++ P+ +
Sbjct: 284 IDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLN 343
Query: 408 I---IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*T 262
+ + P+ W G L L+ + WI+++++DE G S+ F T
Sbjct: 344 VSNDVINPQT--HSWHCGQEL--LTASKVPWINRKDWDERGDSLEFSNFFQT 391
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = -1
Query: 588 MEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIK 409
++ CG+ E SI +C +R L N ++ GG++ +PG +R+++E+ ++ P+ +
Sbjct: 284 IDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLN 343
Query: 408 I---IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*T 262
+ + P+ W G L L+ + WI+++++DE G S+ F T
Sbjct: 344 VSNDVINPQT--HSWHCGQEL--LTASKVPWINRKDWDERGDSLEFSNFFQT 391
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Frame = -1
Query: 549 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK 385
+ KC +D+RK L+ N +L+GG + PG+ R+++EI + + KI +I E K
Sbjct: 198 VSKCPIDLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIK 257
Query: 384 ----YSVWIGGSILASL-STFQQMWISKQEY 307
+ W+G S+L SL T ++ ++ +E+
Sbjct: 258 NTPLFVSWLGASLLGSLRETIERKSLTLEEW 288
>U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform b protein.
Length = 144
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 373 PYGVLPLWRSNDLNLHCRWGESCD 444
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform c protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 373 PYGVLPLWRSNDLNLHCRWGESCD 444
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform a protein.
Length = 536
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 373 PYGVLPLWRSNDLNLHCRWGESCD 444
P VLPL NDL+ +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 209 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 301
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 312 EYDESGPSIVHRKCF*THRASLPPAARGRLLNSG 211
+Y ++G SIV+ KC T R P R R LN G
Sbjct: 30 DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 209 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 301
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 393 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THRASLPPAAR 232
+RK V G A +S F + K++ DE GPS RK S PAA+
Sbjct: 213 DRKLDVK-SGVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,758
Number of Sequences: 27780
Number of extensions: 266718
Number of successful extensions: 759
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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