Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B03
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 29 0.67
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 6.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.2
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.7 bits (61), Expect = 0.67
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 232 NIYYLINSCVQYF-----RCLLFHLKTLTVTYKS*LKIL*ISFVCIKDVFTLSITR*IVL 396
NIY LI+ C+QYF R FH + + L I+ + F I D + + + VL
Sbjct: 19 NIYLLISGCLQYFYEVRKRSHYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTNESVWNVL 78
Query: 397 GSILFY 414
I ++
Sbjct: 79 SIITYF 84
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +1
Query: 91 TLYNRLINVMKHEIVVNLIFYRVFLHSESYFVRSVFLVFS*ALKVYKNIYYLINSCVQYF 270
TLY R++ + +LIF + +LH +++ + ++ +S + V N Y C+ +
Sbjct: 45 TLYRRIVECCAS--LCSLIFSKYYLHYKTFRILTIIQSWSDKVSVLPNRLY----CLPFC 98
Query: 271 RCLLFHLKTLTVT 309
+ +K LT T
Sbjct: 99 NAFIEFVKKLTET 111
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 209 LNTKNTDLTKYDSECKNT 156
L+TKNT L KYD K+T
Sbjct: 219 LSTKNTILKKYDGRFKDT 236
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 410 NKIEPKTIHLVIDNVNTSFIQTK-LIYKIFSHDLYVTVRVFK*NN 279
NKI KTI L I ++N I+T+ L+ K FSH ++ NN
Sbjct: 306 NKINRKTIKLNI-SLNGISIKTEFLVVKKFSHPAAISFTTLYDNN 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,291
Number of Sequences: 5004
Number of extensions: 37677
Number of successful extensions: 76
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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