Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B02
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71267-1|CAA95851.2| 172|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 31 0.37
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 31 0.37
AC084159-14|AAK39369.2| 480|Caenorhabditis elegans Hypothetical... 29 1.1
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 29 1.5
U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z81524-7|CAD54142.2| 597|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z81050-15|CAN86587.1| 597|Caenorhabditis elegans Hypothetical p... 27 4.6
Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical pr... 27 6.0
U14524-1|AAA50785.1| 461|Caenorhabditis elegans avermectin-sens... 27 6.0
AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine r... 27 6.0
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr... 27 8.0
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z71267-1|CAA95851.2| 172|Caenorhabditis elegans Hypothetical
protein W01A8.4 protein.
Length = 172
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/110 (21%), Positives = 50/110 (45%)
Frame = -1
Query: 365 NNYGLSDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQF 186
+ Y LSD E + + + +++E+L++ +P + G D A+ R+ S +TQ
Sbjct: 42 HEYNLSDEEKKAVLWRYRVKEILKKEYLRREYDPHSFKYKEGVTMDPAMFRWYSADMTQA 101
Query: 185 EYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQREQKIRSGELRYKDRR 36
E+F RT + + + L++ + + G+L + DR+
Sbjct: 102 EFFRFTPRTVFLYVGTVFALFYIYTRLMFVPMDKSNEACLDGKLLWWDRQ 151
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -1
Query: 305 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 126
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 125 MFTFG 111
+ TFG
Sbjct: 526 IITFG 530
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -1
Query: 305 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 126
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 125 MFTFG 111
+ TFG
Sbjct: 526 IITFG 530
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -1
Query: 305 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 126
+E+ +FL R P ++++ + V +FE+F + F FV+
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525
Query: 125 MFTFG 111
+ TFG
Sbjct: 526 IITFG 530
>AC084159-14|AAK39369.2| 480|Caenorhabditis elegans Hypothetical
protein Y73B3A.6 protein.
Length = 480
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 198 FHGQKPLQCCVENITSL--RSVFPGVCSLFQELPSHFSTP 311
F +Q C++N L R++ PG SL Q L HF+ P
Sbjct: 326 FKDHATIQSCMQNGVDLTIRNIPPGTTSLIQPLDVHFNGP 365
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 29.1 bits (62), Expect = 1.5
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 60 STANLLFTLRSLVPYQGTKC---KHGYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCV 230
++A F RS P + C H NN++S ++ Y K + KP+ V
Sbjct: 221 TSATTGFRRRSESPIEFLGCILRNHPVLNNQRSCANAAARYNKNVPSLPLNTPKPITPVV 280
Query: 231 ENITSLRSVFPGVCSLFQELPSHFSTP 311
IT S G CSL +++PS P
Sbjct: 281 --ITECASNTNGSCSLAEDMPSALPVP 305
>U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical
protein C05E11.6 protein.
Length = 152
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +3
Query: 57 LSTANLLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVYGKIFKLCYFHGQKPLQCCVEN 236
LS L+ L SL + K N++K+ +T IF++ + + C
Sbjct: 10 LSLLVLILVLISLTDAHASSWKSILNSDKRM-ETKQHSLESIFRVRRTYIDENENCGSHE 68
Query: 237 ITSLRSVFPGVCSLFQELPSHFS 305
+ + ++ +C L EL SHF+
Sbjct: 69 LEMVHTIMDRICMLCHELRSHFA 91
>Z81524-7|CAD54142.2| 597|Caenorhabditis elegans Hypothetical
protein F32H5.7 protein.
Length = 597
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 182 IQTVLLSWTETFAMLCRK 235
+ T+L SWT F +LCRK
Sbjct: 218 LATLLKSWTRPFLLLCRK 235
>Z81050-15|CAN86587.1| 597|Caenorhabditis elegans Hypothetical
protein F32H5.7 protein.
Length = 597
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 182 IQTVLLSWTETFAMLCRK 235
+ T+L SWT F +LCRK
Sbjct: 218 LATLLKSWTRPFLLLCRK 235
>Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical
protein F11A5.10 protein.
Length = 461
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 221 LQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQR 81
+ FL++ T+ E+ ++KR L + V F F L W+ Q+
Sbjct: 411 MNSFLNLLETKTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGQQ 457
>U14524-1|AAA50785.1| 461|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl alpha protein.
Length = 461
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 221 LQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQR 81
+ FL++ T+ E+ ++KR L + V F F L W+ Q+
Sbjct: 411 MNSFLNLLETKTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGQQ 457
>AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine
receptor, class x protein12 protein.
Length = 305
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 291 GVLETKNKPLEKRFGGWLCFRHSIAKVSV 205
G++ KN L+ FG LCF H+IA V
Sbjct: 30 GIVVLKNPILKNAFGA-LCFSHTIANFGV 57
>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
ZK897.1 protein.
Length = 1396
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 347 QISRSYLPYLQSITEFNRQFVMKTIW-NG 430
QI SY+ + TE RQ ++ IW NG
Sbjct: 1286 QIGNSYVTFFHGCTELLRQVIIDEIWVNG 1314
>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
protein B0412.3 protein.
Length = 1107
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 297 ETGVLETKNKPLEKRFGGWLCFRHSIAKVSVHE 199
+ G+L+TKN + R LCF HS A ++++
Sbjct: 273 QQGLLKTKNSVISTRGMCELCFLHSTALEAINQ 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,948,602
Number of Sequences: 27780
Number of extensions: 200765
Number of successful extensions: 612
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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