Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B01
         (780 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07207 Cluster: Neurogenic locus Notch protein precurso...    41   0.040
UniRef50_A0DTK9 Cluster: Chromosome undetermined scaffold_63, wh...    39   0.12 

>UniRef50_P07207 Cluster: Neurogenic locus Notch protein precursor
            [Contains: Processed neurogenic locus Notch protein];
            n=36; Arthropoda|Rep: Neurogenic locus Notch protein
            precursor [Contains: Processed neurogenic locus Notch
            protein] - Drosophila melanogaster (Fruit fly)
          Length = 2703

 Score = 40.7 bits (91), Expect = 0.040
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -1

Query: 720  DTFPTPSPESPDHWXXXXXXXXXXXXXXSDWSDRAALSPNDIQQTNKGAEGIYI 559
            D++PTPSPESP HW                      L  +   Q NKG+E IYI
Sbjct: 2650 DSYPTPSPESPGHWSSSSPRSNSDWSEGVQSPAANNLYISGGHQANKGSEAIYI 2703


>UniRef50_A0DTK9 Cluster: Chromosome undetermined scaffold_63, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_63,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 971

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
 Frame = +3

Query: 9   IYVPSF*SSSMQLSFHQKNINFFXKKTSNXTQNQKQLXLGSTXARAQRFFYTHTDADIPR 188
           I +P F S+  +++   ++ N F + T +    QK   + S+ A+    +  H D  I  
Sbjct: 339 IILPFFSSTYKEINDLNEDPNEFVQLTQDLLDEQKSDIIKSSVAQLIIAYSQHIDGSISF 398

Query: 189 SPKFTTL*IQNFCFRKRSPNTQYKWSTGIVYLYNNPPTFTTI*RVNLKLSVSLLTCYTL- 365
              F+TL I ++C +K   NT+     G++  +     F     +N+ L  SLL    L 
Sbjct: 399 FASFSTL-IASYCIQKLK-NTELSQQLGLIMEFRE-HYFLKSMNINILLETSLLVLSILS 455

Query: 366 -------QL*SVFRESRIGKYLSTVLNVYALSTVYTVNCWFRH*LCYTL 491
                  ++ S+F+ S IG+Y   ++N Y++  V    C F    C T+
Sbjct: 456 NFLISRNEVGSLFK-SFIGEYNDYLIN-YSIPLVKARLCTFIGAYCKTI 502


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,743,721
Number of Sequences: 1657284
Number of extensions: 12382535
Number of successful extensions: 25339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25333
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)