Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B01
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1033 + 10629897-10632311,10633874-10633879                       28   9.6  
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105...    28   9.6  

>12_01_1033 + 10629897-10632311,10633874-10633879
          Length = 806

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 203 CKFWGARYISVGVRVKETLRP 141
           CK W  RY+S+G+    T+ P
Sbjct: 343 CKLWNLRYLSIGMSSNVTMLP 363


>07_01_0142 +
           1054495-1054644,1054767-1055971,1056102-1056180,
           1056619-1056822
          Length = 545

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 718 HVSDAVSRVPGPLVDPLP 665
           H S AVSR PGPL  P P
Sbjct: 299 HYSSAVSRAPGPLPAPPP 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,679,163
Number of Sequences: 37544
Number of extensions: 323551
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)