Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A23
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   0.39 
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   3.6  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   3.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   4.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   4.8  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    26   4.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   6.3  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   8.4  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 426 TDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLIWSIPLVSKQQ--KTGSLEFTVTPSIPN 253
           TD N  + L +GN  V + +    YT K   LI     + + +  + GS+     P++PN
Sbjct: 752 TDANARVELHTGNKMVTIPKENLLYTTKTGELISYTEFIERSRGIRPGSISTADGPNVPN 811


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 438 HLVLTDVNITIPLPSGNTSVVVHQWEGSYTQK 343
           HL LTD N+TI   +  T  VV++ + S++ K
Sbjct: 325 HLRLTDDNLTIAYRNDKTGEVVYKDKFSFSNK 356


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 427 DRCQYHHTASFWQHFGGGAPVGG*LHAEGTQPHLEHSAREQTTE 296
           ++C ++   S  Q+   G PVGG +H+   Q   ++S   +  E
Sbjct: 41  EKCTFNKYYSSSQYQHTGRPVGGNIHSSSNQQRQKNSEAPRINE 84


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  INVSHLYEEKIKQLIISFKQT 115
           IN SHLY    KQ+I  F +T
Sbjct: 418 INTSHLYNYSTKQMISKFWET 438


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 50  HINVSHLYEEKIKQLIISFKQTRICLAWKLXSGEKSTGDPSSACVTLTAVNNASEVSDVH 229
           HI VSH      KQ ++S ++T+    +       +T  PS +     ++ N S+ S   
Sbjct: 39  HIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKHLNTETPSFS----VSIENPSKPSAAF 94

Query: 230 VTES-GKKSL--GIDGV 271
              S GKKS    IDG+
Sbjct: 95  NDASLGKKSTEHQIDGI 111


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 114 VCLNEIISCFIFSSYKWETLM*IYFSMH*KKPCI 13
           V LN+ +   +FS+ +WET+  IY  ++    CI
Sbjct: 62  VQLNDQVIHLLFSANRWETIQYIYEQINKGVTCI 95


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 331 EVASLLRVATLPLVHHHRSVARRKRYGDIDICQHQVILLQLVFDI 465
           E+++ LRVA   L      V R       D+ +HQ ++LQL  +I
Sbjct: 843 ELSNDLRVANSKLSECSDDVRRLTLQNSFDLREHQTLVLQLQSNI 887


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -3

Query: 447 EQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLIWSIPLVSKQQKTGSL 283
           E D L +   N ++PL S  +S + + +E   T   +  +   P      K GS+
Sbjct: 207 EDDLLAIVSDNFSLPLSSSQSSSLANSYESLSTTLDKPSLTLDPEAFPTHKRGSI 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,038
Number of Sequences: 5004
Number of extensions: 51392
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)