Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A23
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 75 4e-14
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 75 6e-14
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 74 8e-14
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 64 8e-11
09_04_0383 + 17141534-17142046 30 1.2
12_02_0960 - 24826918-24827373,24828357-24828471,24831110-248312... 29 2.1
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 29 2.1
07_01_0200 + 1433859-1434377 29 3.7
07_01_0196 + 1400708-1401226 29 3.7
07_01_0192 + 1367558-1368076 29 3.7
07_01_0188 + 1334405-1334923 29 3.7
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 6.5
03_02_0748 + 10896467-10897447 28 6.5
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 28 6.5
07_01_0204 + 1476517-1477047 27 8.6
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 74.9 bits (176), Expect = 4e-14
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Frame = -3
Query: 495 PKASXGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLI--WS 322
P S VNIEYE + L +V I+IPLP+ + V Q +G + RN + WS
Sbjct: 420 PSVSGNETYVNIEYEASE-MFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWS 478
Query: 321 IPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGSPVDFS 148
I LV + ++GSLEFTV + P+ FFP+SV +++ + + L + +GSP FS
Sbjct: 479 IILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFS 536
>05_03_0442 + 14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 74.5 bits (175), Expect = 6e-14
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = -3
Query: 495 PKASXGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLI--WS 322
P S VNIEYE + L +V I+IPLP+ + V Q +G + RN + WS
Sbjct: 680 PSVSGSETYVNIEYEAAE-MFDLHNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWS 738
Query: 321 IPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGSPVDFSPE 142
I L+ + ++GS+EF V P+ P+ FFP+S+ +++ ++ + L + +DG+P +S
Sbjct: 739 ILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQR 798
Query: 141 XSFHARQIRV 112
A +V
Sbjct: 799 ARLVAANYQV 808
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 74.1 bits (174), Expect = 8e-14
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Frame = -3
Query: 495 PKASXGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLI--WS 322
P S VNIEYE + L +V I+IPLP+ + V Q +G + RN + WS
Sbjct: 506 PSVSGNETYVNIEYEAAE-MFDLHNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWS 564
Query: 321 IPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGSPVDFS 148
I L+ + ++GS+EF V P+ P+ FFP+S+ +++ ++ + L + +DG+P +S
Sbjct: 565 ILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYS 622
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 64.1 bits (149), Expect = 8e-11
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Frame = -3
Query: 468 VNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLI--WSIPLVSKQQK 295
VNIEYE + L V I+IPLP+ + V Q +G + RN + WSI L+ + +
Sbjct: 555 VNIEYEASE-MFDLHSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSIILIDQSNR 613
Query: 294 TGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGS 163
+GS+EF V P+ P+ F+P+SV +++ + + + + +GS
Sbjct: 614 SGSMEFVVPPADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGS 657
>09_04_0383 + 17141534-17142046
Length = 170
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 364 PLVHHHRSVARRKRYGDIDICQH 432
PL HHHR + R+GD+ C +
Sbjct: 75 PLTHHHRGTSYSGRHGDVTRCNY 97
>12_02_0960 -
24826918-24827373,24828357-24828471,24831110-24831236,
24831517-24831559,24831964-24832022,24832850-24833141
Length = 363
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 298 LLFAHERNAPDEVASLLRVATLPLVHHHRSV 390
LL HER P V L+ V L L H +R+V
Sbjct: 92 LLGGHERATPKSVLELMNVKDLTLAHMYRTV 122
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = -3
Query: 294 TGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGS 163
+GS+EF V P+ P+ FFP+SV +++ + + + + ++GS
Sbjct: 208 SGSMEF-VPPADPSMFFPISVGFSTSNTFSDVKVPGIRPLKEGS 250
>07_01_0200 + 1433859-1434377
Length = 172
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 288 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 380
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0196 + 1400708-1401226
Length = 172
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 288 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 380
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0192 + 1367558-1368076
Length = 172
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 288 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 380
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0188 + 1334405-1334923
Length = 172
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 288 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 380
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/84 (25%), Positives = 31/84 (36%)
Frame = -2
Query: 352 HAEGTQPHLEHSAREQTTENRES*VHRHSVYTQRLLPALRDVDIGNFTCIIDSCQSDASG 173
HA+G QP ++ S+REQ +N S + R L+ G I + S
Sbjct: 273 HAQGQQPLVDISSREQRAKNVSSTMEREKAEPLNQASELKKAQAGK---TIGCPKRKRSS 329
Query: 172 RRVAR*LLSRXQFPRKTNTSLFKR 101
+ FP N L+ R
Sbjct: 330 KNAGENKRKNKGFPSSPNEGLYLR 353
>03_02_0748 + 10896467-10897447
Length = 326
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 300 VVCSRAECSR*GCVPSACSYPPTGAPPPKCCQKEA 404
+V +A+ R G + A P +PP KCC+ EA
Sbjct: 274 IVARKADPRRGGGLAGARGAVPVVSPPCKCCKMEA 308
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -3
Query: 336 NLIWSIPLVSKQQK-----TGSLEFTVTPSIPNDFFPLSVTWTSE 217
N+ S P ++K++ T +LEF + ++ N F P++ WT+E
Sbjct: 531 NVKSSTPSINKEELLKLLGTLALEFMLVSAVANSFRPVNARWTTE 575
>07_01_0204 + 1476517-1477047
Length = 176
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 288 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 380
S S+ C+ A CS G V +C+Y P G P
Sbjct: 141 STTSIGCASAACSNGGGVIISCNYSPPGNWP 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,298,471
Number of Sequences: 37544
Number of extensions: 404220
Number of successful extensions: 1135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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