Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A23
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_32734| Best HMM Match : Keratin_B2 (HMM E-Value=0.14) 29 2.2
SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15) 29 2.9
SB_5778| Best HMM Match : Gag_MA (HMM E-Value=1.2) 29 3.8
SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026) 28 5.0
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 28 5.0
SB_23542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05) 27 8.7
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 82.6 bits (195), Expect = 2e-16
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Frame = -3
Query: 495 PKASXGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGS--YTQKGRNLIWS 322
P + G CDVNIEYEL D L L DV ITIP+P G VV + +G Y K L W
Sbjct: 855 PSENDGQCDVNIEYELLVDGLELNDVVITIPVPHGVGGPVVGEIDGEYHYNHKQSTLGWQ 914
Query: 321 IPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTA 193
+P++ K+GS+EF++ P DFFP++V++ S + L A
Sbjct: 915 VPVIDASNKSGSMEFSIAGQ-PGDFFPVTVSFFSSKTYCDLKA 956
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 285 DSRFSVVCSRAECSR*GCVPSACSYPPTGAPPP 383
D + V C C+ C P+ C+ PP PPP
Sbjct: 79 DKKCDVSCMPTSCAP-ACPPACCAPPPPPPPPP 110
>SB_32734| Best HMM Match : Keratin_B2 (HMM E-Value=0.14)
Length = 308
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 268 SVYTQRLLPALRDVDIGNFTCIIDSCQSDASGRRVA 161
S TQ L+ + D D+G C++ SC + + R+A
Sbjct: 98 SCATQSLITRIADCDVGQNECLVTSCATQSLIARIA 133
>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
Length = 889
Score = 29.1 bits (62), Expect = 2.9
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = -1
Query: 410 PYRFLLATLRWWCTSGRVATRRRDATSSGAFRS*ANNRKPGVLSSP---SLRLYPTTSSR 240
P R + AT R T G A+ D G N RK + P S L PT S
Sbjct: 763 PLRKMAATRR---TGGSSASDE-DKKKKGTKVMRKNGRKKSLSDRPITDSSYLIPTPSKP 818
Query: 239 SP*RGHRKLHLHY*QLSK*RKRKTGRPLTSLQXSVSTQDKY 117
S + ++L +LS RK+ GRPL S +T K+
Sbjct: 819 SARGSEQVVNLPLRKLSDVRKKSGGRPLLQRSNSNNTTIKH 859
>SB_5778| Best HMM Match : Gag_MA (HMM E-Value=1.2)
Length = 250
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 360 PPTGAPPPKCCQKEAVW*Y*HLSTPGDPAPARIRY*RHILRLTPSDGQQFTGKRSQLXPS 539
PP+ APPP + A + ++P P P + +++L+ + S+G T S L S
Sbjct: 108 PPSPAPPPTPSLRIAEKQHQSRASPPPPPPPPVLKPQNMLKDSKSEGASKTSSNSDLIQS 167
Query: 540 L 542
+
Sbjct: 168 I 168
>SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)
Length = 502
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 179 CVTLTAVNNASEVSDVHVTESGKKSLGIDGVTVNSRLPVFCCLLTSGMLQMRLRPFCV*L 358
CVT + + + + S S+G+ G+T++ + C + ++ + LR F V L
Sbjct: 425 CVTPMYILELTRLFYYMINRSALDSIGLIGLTISFFVAFMCPAFSPFIIFVFLRDFRVAL 484
Query: 359 PSHWCTTT 382
+ +C TT
Sbjct: 485 RNLFCKTT 492
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 438 HLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLIWSIPLVSKQQKTGSLE-FTVTPS 262
H +L V IT P P NTS H + T ++ PL + T L+ T+TP
Sbjct: 690 HTLLQPVTITPPKPQHNTSTTSHHYTTKTTT--QHFYNQSPLHHQNHNTTLLQPVTITPP 747
Query: 261 IP 256
P
Sbjct: 748 KP 749
>SB_23542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 319 SAREQTTENRES*VHRHSVYTQRLLPALRDVDIGNFTCIIDSCQSDASGRRV 164
S++ + R++ +HRH + Q L P L VD G + Q +A RRV
Sbjct: 68 SSKSRERVPRKAELHRHRLRAQTLQPDLPGVDAGPRAVRLLRPQQNAEERRV 119
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -3
Query: 459 EYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLIWSIPL 313
+Y+ + +HL+L + IPLP + V+ S +Q+ ++ + P+
Sbjct: 1031 DYDADSEHLLLQPKSAIIPLPDMHLRAVIDSDGNSGSQEDKDAWYECPV 1079
>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
Length = 596
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = -3
Query: 360 GSYTQKGRNLIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVT 181
GS+ ++ N + +V ++TG EFTV + + + + W + L L +VT
Sbjct: 47 GSFVEEYNN---KVQIVMLDEETG--EFTVRSTFDHPYPTTKIIWIPDNVLLSLVMARVT 101
Query: 180 QAE 172
Q +
Sbjct: 102 QGD 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,120
Number of Sequences: 59808
Number of extensions: 427594
Number of successful extensions: 1198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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