Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A23
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun...    58   4e-09
At1g22000.1 68414.m02752 F-box family protein contains F-box dom...    30   1.0  
At4g30130.1 68417.m04283 expressed protein contains Pfam domains...    29   1.8  
At5g09680.1 68418.m01120 cytochrome b5 domain-containing protein...    29   3.1  
At3g61770.1 68416.m06929 expressed protein contains Pfam domain,...    28   4.1  
At3g49840.1 68416.m05449 proline-rich family protein contains pr...    23   6.1  
At5g15680.1 68418.m01834 expressed protein                             27   7.2  
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    27   9.5  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    27   9.5  
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ...    27   9.5  
At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C...    27   9.5  

>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
           subunit-related contains pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 527

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
 Frame = -3

Query: 495 PKASXGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLI--WS 322
           P  S     V++EYE       LT+V I++PLP+   +  V Q +G +    RN +  WS
Sbjct: 396 PSVSGNETYVSLEYEASS-MFDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWS 454

Query: 321 IPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETS 211
           I L+    ++GS+EF V P   + FFP+SV + + ++
Sbjct: 455 ILLIDNSNRSGSMEFVVPPVDSSVFFPISVQFAATST 491


>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 727

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 327 WSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSL 208
           W +PL+   Q +  L+   TP+I NDF  LS++W   +S+
Sbjct: 344 WLMPLMFLLQNSPKLK---TPTIDNDFECLSLSWNQPSSI 380


>At4g30130.1 68417.m04283 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 725

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SFRCPRHGEREEVVGYRRSDGELKTPGFLLFAHERNAPDEVASLLR 351
           S    R G    VVG    DG+ +TPGF ++ + R  P  +A +++
Sbjct: 267 SLEVSRGGTTGHVVGVTSDDGKGETPGFTVYLNRR--PTSMAEVIK 310


>At5g09680.1 68418.m01120 cytochrome b5 domain-containing protein
           flavohemoprotein b5+b5R, Homo sapiens, EMBL:AF169803
          Length = 211

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 363 EGSYTQKGRNLIWSIP-LVSKQQKTGSLEFTVTPS 262
           +G   QK   LIW    L  K++  GSL FTVT S
Sbjct: 35  DGLDQQKSNGLIWKDKSLPPKEETIGSLSFTVTDS 69


>At3g61770.1 68416.m06929 expressed protein contains Pfam domain,
           PF02681: Uncharacterized BCR, COG1963
          Length = 284

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +2

Query: 149 EKSTGDPSSACVTLTAVNNASEVSDVHVTESGKKSLGIDGVTVNSRLPVFCCLLTSG--- 319
           E  T +PS AC + T  +  S  S V +T   K          N+ L +FCC  +S    
Sbjct: 2   ESLTSNPSFACFSKTISHYPSRFSFVKLTSIQKLEAS------NNTLSLFCCKSSSNPKP 55

Query: 320 --MLQMRLRPFCV*LP 361
               +++L P CV  P
Sbjct: 56  DCNRRIKLNPLCVLRP 71


>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 23.0 bits (47), Expect(2) = 6.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 342 PSACSYPPTGAPPP 383
           P    YPP G PPP
Sbjct: 501 PPKEGYPPAGYPPP 514



 Score = 23.0 bits (47), Expect(2) = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 357 YPPTGAPPPK 386
           YPP G PPP+
Sbjct: 527 YPPAGYPPPQ 536


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 510  TGKRSQLXPSLVVATLPLEGLR 575
            TG+  QL PSLV A+ PL G+R
Sbjct: 1473 TGRSGQLLPSLVNASGPLMGVR 1494


>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
           putative similar to Swiss-Prot:P05055 polyribonucleotide
           nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
           phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 273 VTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGSPVD 154
           +  S+P+   PL  +  S  ++ + TAV+  +AE  SPV+
Sbjct: 782 IVASMPSIVTPLQKSRLSVPAVVIRTAVECNEAEKSSPVN 821


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = -3

Query: 360 GSYTQKGRNLIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVT 181
           GS T++ R L+  + L SK+ + G++      SI     P++ T   E S + +  VKV 
Sbjct: 95  GSITERRRRLLNGMGLESKKTRLGAI------SIQRVSEPVAAT--GECSGSRVAEVKVE 146

Query: 180 QAEDGSPVD 154
           +++  SPV+
Sbjct: 147 ESDHNSPVN 155


>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +1

Query: 250 VVGYRRSDGELKTPGFLLFAHERNAPDEVASLLRVATLPLVHHHRSVARRKRYGDIDICQ 429
           V+G  R+  ++ + GF+  ++ R+  D + S + V  +   H H  +  + RYG +  CQ
Sbjct: 444 VLGRCRACRQMFSEGFIYNSY-RDKFDLLCSSITVPFIHGSHDHHLLYYKLRYGQVKTCQ 502

Query: 430 H 432
           +
Sbjct: 503 N 503


>At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GI:4336436 from [Lotus japonicus]
          Length = 371

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -1

Query: 407 YRFLLATLRWWCTSGRVATRRRDATSSGAFRS*ANNRKPGVLSSPSLRLYPTTSSRSP 234
           +   L +  W+C S  +        S    R  AN+  P   SSP+ +     SSR P
Sbjct: 45  FYLFLCSFFWFCQSPNLTNPSPPPLSVAPLRGDANSPPPESSSSPATKSSLMISSRDP 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,196
Number of Sequences: 28952
Number of extensions: 293597
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)