Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A22
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    34   0.11 
At1g30760.1 68414.m03761 FAD-binding domain-containing protein s...    30   1.8  
At5g01280.1 68418.m00037 expressed protein                             29   3.2  
At1g76070.1 68414.m08834 expressed protein                             29   3.2  
At1g47410.1 68414.m05250 expressed protein identical to hypothet...    28   5.5  
At1g28300.1 68414.m03473 transcriptional factor B3 family protei...    28   5.5  
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei...    28   7.3  
At2g32040.1 68415.m03914 integral membrane transporter family pr...    28   7.3  
At1g19360.1 68414.m02409 expressed protein                             28   7.3  
At3g30230.1 68416.m03820 myosin heavy chain-related similar to M...    27   9.6  

>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 367 WEDNNVIFKILNTEYEMYLKLDVNVDSYGDRKTWGSNGSSEKRHTWSLYPVKVGDQQLF 191
           WED+  I+K+  ++ + Y++ ++N D   + + W       K+  WS Y     D + F
Sbjct: 278 WEDDVDIYKLYYSDVDEYVEYNINDDDINELRVWVL--EDVKKQQWSKYAYTWTDDRFF 334


>At1g30760.1 68414.m03761 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 534

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 424 WGDGKDYTSHHVSWQLISLWEDNNVIFKILNTEYEMYLKLDVNVDSYG-DRKTWGS 260
           W DGK   + H+ W           + K   + Y  Y  LD+ ++  G D + WG+
Sbjct: 445 WQDGKTSEAKHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGSDAREWGN 500


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -2

Query: 600 PCRSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PG 421
           P    TS  TRAT TSS  TS   S S  ++   + ++ +T+  +       ST     G
Sbjct: 114 PTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQTTG 173

Query: 420 ETEKT--TPATMSAGNSSLFGKTTT 352
               T      MSA NS    +++T
Sbjct: 174 SATSTRSNNRPMSAPNSKPGSRSST 198


>At1g76070.1 68414.m08834 expressed protein
          Length = 272

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 533 AREVIFDDVLVALVPQLVRERHGVLDALRDEPRDDVATDVGAL 661
           A ++ F   +V LVP   R R    DA+ DEP     + +G +
Sbjct: 52  ANKMFFSGPMVPLVPNAARVRRNKSDAVWDEPTSPKVSCIGQI 94


>At1g47410.1 68414.m05250 expressed protein identical to
           hypothetical protein GB:AAD46041 GI:5668815 from
           (Arabidopsis thaliana)
          Length = 189

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 39  EGCHCHGWIMKP*YSGLSATVPLLPHTRRSPYES 140
           E CHC GW       GL     LLP   +SP ES
Sbjct: 146 EFCHCQGWPF-----GLGRKAALLPPLPKSPAES 174


>At1g28300.1 68414.m03473 transcriptional factor B3 family protein /
           leafy cotyledon 2 (LEC2) nearly identical to LEAFY
           COTYLEDON 2 [Arabidopsis thaliana] GI:15987516; contains
           Pfam profile PF02362: B3 DNA binding domain
          Length = 363

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 206 RPTAVPHREPGVPAGTEAGRERGLIRGPPCVGEQRDSRRQPRVLRL 69
           +P  +    P +P  T+ G E G + G PC+ ++R     PR+ ++
Sbjct: 63  QPVYLSECYPQIPV-TQTGSEFGSLVGNPCLWQERGGFLDPRMTKM 107


>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 210

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 463 LDANVGEYNDRLTWGDGKDYTS 398
           L  + G Y + L WG G D+TS
Sbjct: 117 LTHSTGPYGENLFWGSGSDFTS 138


>At2g32040.1 68415.m03914 integral membrane transporter family
           protein contains 9 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 560

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 60  WIMKP*YSGLSATVPLLPHTRRS 128
           W++KP Y  +S +VPL  + RRS
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRS 195


>At1g19360.1 68414.m02409 expressed protein
          Length = 428

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -1

Query: 442 YNDRLTWGDGKDYTSHHVSWQLISLWE--DNNVIFKILNTEYEMYLKL 305
           +N+ L +    +YT+ H S +++ ++E  ++ V+FK +   +E+  K+
Sbjct: 341 FNEELFYPSHPEYTALHASKRVMDMYEFMNSKVLFKTVRKNHELKKKV 388


>At3g30230.1 68416.m03820 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 527

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 85  GCRRLSRCSPTQGGPRMSPRSRPASVP 165
           GC      SP +  PR SPR+R +S P
Sbjct: 162 GCSPRRNLSPHRNSPRYSPRNRLSSKP 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,742,242
Number of Sequences: 28952
Number of extensions: 304590
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)